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bionet network

updated 8.6 years ago by branislav misovic ▴ 120 • written 8.6 years ago by enricoferrero ▴ 680

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bionet network

updated 8.6 years ago by branislav misovic ▴ 120 • written 8.6 years ago by enricoferrero ▴ 680

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BioNet plotModule

9.2 years ago cristina della beffa ▴ 30

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BioNet bioconductor affymetrixchip network analysis

9.9 years ago svlachavas ▴ 840

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Microarray Visualization Network BioNet Microarray Visualization Network BioNet

14.4 years ago Eva Benito Garagorri ▴ 70

5 results • Page 1 of 1

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Answer: displaying the differential expression with deseq2 over 4X2 samples with the in by James W. MacDonald 67k

If you have paired data you should block on subject, which is algebraically the same as fitting a model on the difference between treated a…

Answer: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by jodan • 0

Your approach sounds solid! You might also consider plotting a scatter plot comparing log2 fold changes from both datasets to identify gene…

Answer: Unused arguments error without used arguments in GSVA? by jodan • 0

It looks like the ssgseaParam function might not be passing the correct parameters to GSVA::gsva(). The error suggests that minSize and max…

Answer: Using genomicRanges / plyranges to calculate score of peaks within intervals by Michael Love 43k

This should be possible with plyranges using `join_overlap` and `group_by` on the metadata from the tile. E.g. create `tile.id` as a variab…

Answer: Reducing and aggregating GRanges with gaps using plyranges by Michael Love 43k

I added `min.gapwidth` to `reduce_ranges()` in recent plyranges releases: https://github.com/tidyomics/plyranges/pull/105

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