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biomartr
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getGFFSet function CRASHES R session
getGFF
NCBI
biomartr
biomaRt
3.6 years ago
Matan G.
▴ 60
0
votes
9
replies
2.3k
views
The GO annotation of fugal species outside of 20 model organisms is outdated
GO
biomartr
annotation
ensemble
fungi
updated 3.9 years ago by
James W. MacDonald
68k • written 3.9 years ago by
Bettina
• 0
0
votes
0
replies
893
views
taxonomy download from NCBI based on geneID
biomartr
Bioconducter
5.7 years ago
Jitendra
▴ 10
0
votes
3
replies
1.6k
views
getGenome {biomartr} not working for viruses?
Genbank
biomartr
Genomic sequences
6.9 years ago
peter.durr
• 0
1
vote
2
replies
1.2k
views
Trouble using getBM with ecaballus_gene_ensembl
biomart
biomartr
updated 6.9 years ago by
James W. MacDonald
68k • written 6.9 years ago by
stephen.williams
▴ 10
5 results • Page
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Comment: DESeq2 - human data, weird results, troubleshooting
by
bd2000
▴ 30
I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
by
James W. MacDonald
68k
The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
by
ATpoint
★ 4.8k
> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…
Comment: Ensembl site unresponsive via biomaRt
by
darylruiz6545
• 0
Thank you so much for sharing the link.
Comment: compute_fasta_digest does not match Salmon index hash
by
Alex
• 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
Votes
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
what the test method for enrichGO in clusterProfiler?
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