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2.1k

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DESeq2 edgeR bigwig limma

2.4 years ago • updated 2.1 years ago Bogdan ▴ 670

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2.4k

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bedgraph wiggleplotr bigwig wig

updated 2.5 years ago by complaintguide • 0 • written 2.5 years ago by Bogdan ▴ 670

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1.8k

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bigWig RNASeqData

3.1 years ago bas_work ▴ 30

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2.2k

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software error BigWig import windows

4.9 years ago lsilva.m • 0

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2.3k

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wiggleplotr bigwig coverage ngs

updated 7.4 years ago by kaur.alasoo ▴ 30 • written 7.4 years ago by borgmichael • 0

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3.6k

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bigwig rtracklayer import granges grangeslist

updated 7.6 years ago by Michael Lawrence ★ 11k • written 7.6 years ago by Assa Yeroslaviz ★ 1.5k

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1.4k

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rtracklayer bigwig import

updated 8.3 years ago by Michael Lawrence ★ 11k • written 8.3 years ago by zx8754 ▴ 10

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1.6k

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bigwig rtracklayer export.bw

updated 8.4 years ago by Michael Lawrence ★ 11k • written 8.4 years ago by story.benjamin ▴ 20

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2.7k

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rtracklayer bigwig

updated 9.1 years ago by laurent.lacroix ▴ 30 • written 9.1 years ago by koneill ▴ 30

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1.4k

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rtracklayer BigWig

updated 9.3 years ago by Michael Lawrence ★ 11k • written 9.3 years ago by dborgesrmit • 0

10 results • Page 1 of 1

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Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k

If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…

Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0

why aren't there any answers?

Comment: Too many significant genes when integrating gtex and tcga by Jane • 0

I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…

Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180

Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…

Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k

No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…

Votes

A: Unbalanced experiment with multiple samples from each patient.

Unbalanced experiment with multiple samples from each patient.

Answer: Vertical line at A=0, nothing else, on MA plot

Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct

Answer: Group-specific condition effects with individuals nested: matrix is not full ra

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