Bioconductor Bigwig

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1.8k

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DESeq2 edgeR bigwig limma

2.1 years ago • updated 22 months ago Bogdan ▴ 670

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2.1k

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bedgraph wiggleplotr bigwig wig

updated 2.2 years ago by complaintguide • 0 • written 2.2 years ago by Bogdan ▴ 670

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1.6k

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bigWig RNASeqData

2.8 years ago bas_work ▴ 30

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2.0k

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software error BigWig import windows

4.6 years ago lsilva.m • 0

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2.0k

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wiggleplotr bigwig coverage ngs

updated 7.1 years ago by kaur.alasoo ▴ 30 • written 7.1 years ago by borgmichael • 0

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3.4k

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bigwig rtracklayer import granges grangeslist

updated 7.3 years ago by Michael Lawrence ★ 11k • written 7.3 years ago by Assa Yeroslaviz ★ 1.5k

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1.3k

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rtracklayer bigwig import

updated 8.0 years ago by Michael Lawrence ★ 11k • written 8.0 years ago by zx8754 ▴ 10

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1.5k

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bigwig rtracklayer export.bw

updated 8.1 years ago by Michael Lawrence ★ 11k • written 8.1 years ago by story.benjamin ▴ 20

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2.5k

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rtracklayer bigwig

updated 8.8 years ago by laurent.lacroix ▴ 30 • written 8.8 years ago by koneill ▴ 30

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1.4k

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rtracklayer BigWig

updated 9.0 years ago by Michael Lawrence ★ 11k • written 9.0 years ago by dborgesrmit • 0

10 results • Page 1 of 1

Recent ...

Replies

Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0

Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…

Comment: Merge Replicates vs Mixed Model by abadgerw • 0

@gabrielhoffman any insight?

Comment: makeContrastsDream for Interaction by abadgerw • 0

@gabrielhoffman any insight?

Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta by Michael Love 42k

That is the rows that did converge.

Answer: Is my time course analysis with DESeq2 valid? by Michael Love 42k

For choosing the correct statistical design, I recommend working with a local statistician or someone familiar with linear models in R. I h…

Votes

A: Some questions for remove batch effect by using mnnCorrect

A: Recommendations for combining multiple 10x runs into one SingleCellExperiment

Answer: [How to construct a model.matrix ]

Answer: Handling biological replicates in DESeq2

Comment: biomaRt rnorvegicus_gene_ensembl not available anymore

Awards • All

Popular Question to Michael Stadler ▴ 350

Scholar to ATpoint ★ 4.5k

Commentator to James W. MacDonald 67k

Popular Question to Stefano Mangiola ▴ 20