Bioconductor Bigwig

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2.2k

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DESeq2 edgeR bigwig limma

2.5 years ago • updated 2.2 years ago Bogdan ▴ 670

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2.5k

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bedgraph wiggleplotr bigwig wig

updated 2.6 years ago by complaintguide • 0 • written 2.6 years ago by Bogdan ▴ 670

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1.9k

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bigWig RNASeqData

3.2 years ago bas_work ▴ 30

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2.3k

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software error BigWig import windows

5.0 years ago lsilva.m • 0

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2.4k

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wiggleplotr bigwig coverage ngs

updated 7.5 years ago by kaur.alasoo ▴ 30 • written 7.5 years ago by borgmichael • 0

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3.7k

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bigwig rtracklayer import granges grangeslist

updated 7.7 years ago by Michael Lawrence ★ 11k • written 7.7 years ago by Assa Yeroslaviz ★ 1.5k

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1.4k

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rtracklayer bigwig import

updated 8.4 years ago by Michael Lawrence ★ 11k • written 8.4 years ago by zx8754 ▴ 10

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1.7k

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bigwig rtracklayer export.bw

updated 8.4 years ago by Michael Lawrence ★ 11k • written 8.4 years ago by story.benjamin ▴ 20

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2.8k

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rtracklayer bigwig

updated 9.2 years ago by laurent.lacroix ▴ 30 • written 9.2 years ago by koneill ▴ 30

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1.4k

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rtracklayer BigWig

updated 9.4 years ago by Michael Lawrence ★ 11k • written 9.4 years ago by dborgesrmit • 0

10 results • Page 1 of 1

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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

Votes

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

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