Bioconductor Bigwig

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1.9k

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DESeq2 edgeR bigwig limma

2.1 years ago • updated 22 months ago Bogdan ▴ 670

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2.1k

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bedgraph wiggleplotr bigwig wig

updated 2.2 years ago by complaintguide • 0 • written 2.2 years ago by Bogdan ▴ 670

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1.7k

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bigWig RNASeqData

2.8 years ago bas_work ▴ 30

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2.0k

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software error BigWig import windows

4.7 years ago • updated 4.6 years ago lsilva.m • 0

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2.1k

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wiggleplotr bigwig coverage ngs

updated 7.1 years ago by kaur.alasoo ▴ 30 • written 7.1 years ago by borgmichael • 0

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3.4k

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bigwig rtracklayer import granges grangeslist

updated 7.3 years ago by Michael Lawrence ★ 11k • written 7.3 years ago by Assa Yeroslaviz ★ 1.5k

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1.3k

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rtracklayer bigwig import

updated 8.0 years ago by Michael Lawrence ★ 11k • written 8.0 years ago by zx8754 ▴ 10

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1.5k

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bigwig rtracklayer export.bw

updated 8.1 years ago by Michael Lawrence ★ 11k • written 8.1 years ago by story.benjamin ▴ 20

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2.6k

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rtracklayer bigwig

updated 8.8 years ago by laurent.lacroix ▴ 30 • written 8.8 years ago by koneill ▴ 30

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1.4k

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rtracklayer BigWig

updated 9.0 years ago by Michael Lawrence ★ 11k • written 9.0 years ago by dborgesrmit • 0

10 results • Page 1 of 1

Recent ...

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Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data by rcreed • 0

The updated version worked well on my data. Thank you!

Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di by James W. MacDonald 67k

The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…

Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…

Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0

Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k

You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…

Votes

Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data

A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

A: correcting the batch effects in Limma and SVA

Awards • All

Scholar to Haibo Liu ▴ 20