Bioconductor Bigwig

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2.0k

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DESeq2 edgeR bigwig limma

2.3 years ago • updated 2.0 years ago Bogdan ▴ 670

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2.3k

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bedgraph wiggleplotr bigwig wig

updated 2.4 years ago by complaintguide • 0 • written 2.4 years ago by Bogdan ▴ 670

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1.8k

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bigWig RNASeqData

3.0 years ago bas_work ▴ 30

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2.2k

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software error BigWig import windows

4.8 years ago lsilva.m • 0

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2.2k

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wiggleplotr bigwig coverage ngs

updated 7.3 years ago by kaur.alasoo ▴ 30 • written 7.3 years ago by borgmichael • 0

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3.5k

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bigwig rtracklayer import granges grangeslist

updated 7.5 years ago by Michael Lawrence ★ 11k • written 7.5 years ago by Assa Yeroslaviz ★ 1.5k

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1.3k

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rtracklayer bigwig import

updated 8.2 years ago by Michael Lawrence ★ 11k • written 8.2 years ago by zx8754 ▴ 10

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1.6k

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bigwig rtracklayer export.bw

updated 8.3 years ago by Michael Lawrence ★ 11k • written 8.3 years ago by story.benjamin ▴ 20

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2.7k

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rtracklayer bigwig

updated 9.0 years ago by laurent.lacroix ▴ 30 • written 9.0 years ago by koneill ▴ 30

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1.4k

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rtracklayer BigWig

updated 9.2 years ago by Michael Lawrence ★ 11k • written 9.2 years ago by dborgesrmit • 0

10 results • Page 1 of 1

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Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0

It was due to the comma. Thank you!

Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k

Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…

Answer: Restricting differential binding analysis to only TSS-proximal regions by Aaron Lun ★ 28k

Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…

Comment: Sample-specific methylation values using QSEA by User3088 • 0

Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…

Comment: input for singR function by iamin053 • 0

Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!

Votes

Answer: Unused arguments error without used arguments in GSVA?

Unused arguments error without used arguments in GSVA?

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

Awards • All

Teacher to Axel Klenk ★ 1.1k