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bigWig
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1.8k
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bigwig to counts
DESeq2
edgeR
bigwig
limma
24 months ago • updated 20 months ago
Bogdan
▴ 670
0
votes
2
replies
1.9k
views
converting bedgraph into bigwig
bedgraph
wiggleplotr
bigwig
wig
updated 2.1 years ago by
complaintguide
• 0 • written 2.1 years ago by
Bogdan
▴ 670
0
votes
1
reply
1.6k
views
'Negative' and 'Positive' bigWig RNAseq files: how to deal with these???
bigWig
RNASeqData
2.7 years ago
bas_work
▴ 30
0
votes
5
replies
1.9k
views
rtracklayer::import() BigWig issue on windows (solved)
software error
BigWig
import
windows
4.5 years ago
lsilva.m
• 0
0
votes
1
reply
1.9k
views
Plotting bigwig coverage over chromosomal coordinates with wiggleplotr
wiggleplotr
bigwig
coverage
ngs
updated 7.0 years ago by
kaur.alasoo
▴ 30 • written 7.0 years ago by
borgmichael
• 0
3
votes
15
replies
3.3k
views
(Big)wig file of complete chromosome
bigwig
rtracklayer
import
granges
grangeslist
updated 7.2 years ago by
Michael Lawrence
★ 11k • written 7.2 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
1
reply
1.3k
views
Strange first_time object in rtracklayer import
rtracklayer
bigwig
import
updated 7.9 years ago by
Michael Lawrence
★ 11k • written 7.9 years ago by
zx8754
▴ 10
2
votes
3
replies
1.5k
views
rtracklayer - export.bw bug
bigwig
rtracklayer
export.bw
updated 7.9 years ago by
Michael Lawrence
★ 11k • written 7.9 years ago by
story.benjamin
▴ 20
3
votes
9
replies
2.5k
views
export.bw produces enormous files (10^5 times bigger than they should be)
rtracklayer
bigwig
updated 8.7 years ago by
laurent.lacroix
▴ 30 • written 8.7 years ago by
koneill
▴ 30
0
votes
2
replies
1.3k
views
Rtracklayer creating large temp files when importing BigWigs
rtracklayer
BigWig
updated 8.9 years ago by
Michael Lawrence
★ 11k • written 8.9 years ago by
dborgesrmit
• 0
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Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 20
Hi Maria, so what is the code you are using? By the 3rd way to conduct the analysis do you mean looking at the interaction model from part …
Comment: miRTarRnaseq library
by
María Calvo
• 0
Hello, in line with the previous questions, when the miRNA-mRNA interaction analysis is performed (3 rd way to conduct the analysis), I obt…
Answer: heatmap with batch effect
by
James W. MacDonald
67k
You have only one condition in the second batch, so it's not possible to remove the batch effect. You can probably adjust for it somewhat, …
Answer: how do I convert an Ilumn IDREF to a CPG loci
by
James W. MacDonald
67k
``` > library(IlluminaHumanMethylationEPICanno.ilm10b4.hg19) > Locations DataFrame with 865859 rows and 3 columns ch…
Answer: Which input data is acceptable for MAST?
by
Andrew_McDavid
▴ 270
Not too familiar with SCT v2. If it also has a point-mass at zero and the non-zero component is roughly-symmetric, then it might work ok w…
Votes
Answer: How to control batch effect if Group and batch are same?
Answer: How to control batch effect if Group and batch are same?
Answer: How to control batch effect if Group and batch are same?
Comment: Convert HGVS Representation back to Reference Genome Coordinates
Answer: How to control batch effect if Group and batch are same?
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