Bioconductor BigWig

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1.9k

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DESeq2 edgeR bigwig limma

2.1 years ago • updated 22 months ago Bogdan ▴ 670

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2.1k

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bedgraph wiggleplotr bigwig wig

updated 2.2 years ago by complaintguide • 0 • written 2.3 years ago by Bogdan ▴ 670

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1.7k

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bigWig RNASeqData

2.8 years ago bas_work ▴ 30

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2.1k

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software error BigWig import windows

4.7 years ago lsilva.m • 0

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2.1k

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wiggleplotr bigwig coverage ngs

updated 7.1 years ago by kaur.alasoo ▴ 30 • written 7.1 years ago by borgmichael • 0

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3.4k

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bigwig rtracklayer import granges grangeslist

updated 7.3 years ago by Michael Lawrence ★ 11k • written 7.3 years ago by Assa Yeroslaviz ★ 1.5k

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1.3k

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rtracklayer bigwig import

updated 8.0 years ago by Michael Lawrence ★ 11k • written 8.0 years ago by zx8754 ▴ 10

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1.6k

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bigwig rtracklayer export.bw

updated 8.1 years ago by Michael Lawrence ★ 11k • written 8.1 years ago by story.benjamin ▴ 20

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2.6k

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rtracklayer bigwig

updated 8.8 years ago by laurent.lacroix ▴ 30 • written 8.8 years ago by koneill ▴ 30

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1.4k

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rtracklayer BigWig

updated 9.0 years ago by Michael Lawrence ★ 11k • written 9.0 years ago by dborgesrmit • 0

10 results • Page 1 of 1

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Comment: Deseq2 res Function by James W. MacDonald 67k

In addition to Mike's comment, do note that if you are generating a heatmap based on the set of significant genes, the direction of your co…

Answer: Struggle with the replicates of epic array data by James W. MacDonald 67k

You shouldn't be using beta values for a linear model that assumes a unimodal, untruncated distribution (beta values are strictly on (0-1) …

Comment: Identifying potentially associated gene set to drug response using GSVA by Robert Castelo ★ 3.4k

So, if I understand correctly, you derived GSVA scores from gene sets corresponding somehow to drugs in your RNA-seq data. Since GSVA score…

Answer: Deseq2 res Function by Michael Love 43k

> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…

Answer: ANOVA like approach of edgeR by Gordon Smyth 51k

You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…

Votes

Comment: Is it recommended to analyze different tissues together when using edgeR

Answer: Deseq2 res Function

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification

Answer: ANOVA like approach of edgeR

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