Bioconductor BigWig

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2.2k

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DESeq2 edgeR bigwig limma

2.5 years ago • updated 2.3 years ago Bogdan ▴ 670

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replies

2.5k

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bedgraph wiggleplotr bigwig wig

updated 2.6 years ago by complaintguide • 0 • written 2.7 years ago by Bogdan ▴ 670

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1.9k

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bigWig RNASeqData

3.2 years ago bas_work ▴ 30

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2.4k

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software error BigWig import windows

5.1 years ago lsilva.m • 0

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2.4k

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wiggleplotr bigwig coverage ngs

updated 7.5 years ago by kaur.alasoo ▴ 30 • written 7.5 years ago by borgmichael • 0

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3.7k

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bigwig rtracklayer import granges grangeslist

updated 7.7 years ago by Michael Lawrence ★ 11k • written 7.7 years ago by Assa Yeroslaviz ★ 1.5k

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1.4k

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rtracklayer bigwig import

updated 8.4 years ago by Michael Lawrence ★ 11k • written 8.4 years ago by zx8754 ▴ 10

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1.7k

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bigwig rtracklayer export.bw

updated 8.5 years ago by Michael Lawrence ★ 11k • written 8.5 years ago by story.benjamin ▴ 20

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2.8k

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rtracklayer bigwig

updated 9.2 years ago by laurent.lacroix ▴ 30 • written 9.2 years ago by koneill ▴ 30

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1.4k

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rtracklayer BigWig

updated 9.4 years ago by Michael Lawrence ★ 11k • written 9.4 years ago by dborgesrmit • 0

10 results • Page 1 of 1

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Comment: DeSeq Strategies for run to run Replication by Michael Love 43k

You shouldn't need to run `DESeq` on the test data, or manually compute normalization factors. ``` dds_test <- ... # create object dds_te…

Answer: Feature Counts - potential bug with outfile.jcounts by Wei Shi ★ 3.6k

We have made significant changes to how featureCounts annotates junctions detected in read mapping results. These updates are included in t…

Comment: How to perform batch correction on scRNA-seq with confounding plate effects? by 瑞宏 • 0

I would like to share my own understanding: in single-cell RNA sequencing (scRNA-seq), batch correction is solely intended to identify the …

Comment: DiffBind can't find a DAR by Mengjun • 0

Additionally, i checked my bigwig in igv, it shows that the ctrl_1 is more like ko_1, and ctrl_2's track is more like ko_2's track. Did an…

Comment: European Bioconductor Conference 2023 planning by ht • 0

Great news about the European Bioconductor Conference 2023 planning! As someone who enjoys statistical computing and bioinformatics, I'm ex…

Votes

C: Annotating HTA 2.0 genes

A: Annotating HTA 2.0 genes

Answer: Feature Counts - potential bug with outfile.jcounts

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