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Showing :
bedtools
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subsetByOverlaps : comparing GRANGES and keeping all the information in the METACOLUMNS
granges
bedtools
intersect
updated 6.2 years ago by
lee.s
▴ 70 • written 6.2 years ago by
Bogdan
▴ 670
2
votes
3
replies
2.9k
views
Counting reads in fixed width peaks with DiffBind::dba.count without re-centering?
diffbind
chipseq
counts
peaks
bedtools
updated 3.5 years ago by
Rory Stark
★ 5.2k • written 6.6 years ago by
Ni-Ar
▴ 10
0
votes
0
replies
1.1k
views
I need to measure distance of PAR-CLIP data to RNA regions
parclip
bedtools
bed files
gff3
6.8 years ago
linuxborg2
• 0
1
vote
1
reply
1.9k
views
Filtering a BED file according to genomic annotation
bed files
bedtools
filtering
chipseq
updated 6.9 years ago by
Aaron Lun
★ 28k • written 6.9 years ago by
rbronste
▴ 60
0
votes
4
replies
1.5k
views
Error: HelloRanges eval
HelloRanges
bedtools
7.5 years ago
bioinf
▴ 10
2
votes
7
replies
2.4k
views
Minimum overlap for summarizeOverlaps() to call hit
summarizeoverlaps
bedtools
8.7 years ago
tmartinez
• 0
6 results • Page
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Answer: HilBertVis install error
by
James W. MacDonald
67k
It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…
Comment: Identical samples after deseq2 batch effect removal
by
maripane
• 0
Thanks Michael for quick reply. Actually, I also questioned this but later i saw this issue happens within another cluster and different c…
Answer: Identical samples after deseq2 batch effect removal
by
Michael Love
42k
> 2 of my treatment samples have identical normalised gene expression for all genes. This sounds like a quantification / sample labeling…
Answer: Downloading Metagenomic Data with Higher Taxonomic Units
by
Levi Waldron
★ 1.1k
I'm sorry I missed the first post! Yes, it is easy to agglomerate ranks in curatedMetagenomicData datasets. See the example in the vignette…
Comment: Differene between the Wald and LRT test for time-series gene expression data
by
Denise
• 0
This makes a lot of sense, thank you very much!
Votes
A: TopGO: How to retrieve the gene list related to a GO ID ?
A: Error in DESeqDataSet : some values in assay are not integers
A: correcting the batch effects in Limma and SVA
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
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