Bioconductor Bedtools

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12k

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granges bedtools intersect

updated 6.7 years ago by lee.s ▴ 70 • written 6.7 years ago by Bogdan ▴ 670

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3.3k

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diffbind chipseq counts peaks bedtools

updated 4.0 years ago by Rory Stark ★ 5.2k • written 7.0 years ago by Ni-Ar ▴ 10

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1.2k

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parclip bedtools bed files gff3

7.3 years ago linuxborg2 • 0

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2.2k

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bed files bedtools filtering chipseq

updated 7.3 years ago by Aaron Lun ★ 28k • written 7.3 years ago by rbronste ▴ 60

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1.7k

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HelloRanges bedtools

7.9 years ago bioinf ▴ 10

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2.8k

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summarizeoverlaps bedtools

9.1 years ago tmartinez • 0

6 results • Page 1 of 1

Recent ...

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Answer: Help using reduceSimMatrix with a custom annotation by sergisayolspuig ▴ 80

Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…

Answer: Analyzing TnSeq data with DESeq2 by cold.wolverine.arku • 0

That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…

Comment: RNA Seq using Lrt by Rob • 0

So if I have understood what you have said : If i want to see if Day (time) has an effect / is being tested - then the reduced model should…

Comment: How to convert transcript counts to gene counts in R? by ben • 0

Simply summing transcripts by gene is sufficient for use with DESeq2. [sprunki clicker][1] [1]: https://sprunkiclicker.com/

Answer: EuroBioC2024 abstract submission is open! by Ali • 0

[Promo products][1] are a smart way to boost visibility, especially with exciting updates like *News: EuroBioC2024 abstract submission is o…

Votes

A: Unbalanced experiment with multiple samples from each patient.

A: Understanding contrasts limma

Answer: ROAST for small sets

A: conceptual question about FDR, FDR adjusted p-value and q-value

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Popular Question to sergisayolspuig ▴ 80

Popular Question to richardallenfriedmanbrooklyn ▴ 30

Scholar to Gordon Smyth 52k