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bedtools
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5
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9
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subsetByOverlaps : comparing GRANGES and keeping all the information in the METACOLUMNS
granges
bedtools
intersect
updated 5.9 years ago by
lee.s
▴ 70 • written 5.9 years ago by
Bogdan
▴ 670
2
votes
3
replies
2.5k
views
Counting reads in fixed width peaks with DiffBind::dba.count without re-centering?
diffbind
chipseq
counts
peaks
bedtools
updated 3.2 years ago by
Rory Stark
★ 5.2k • written 6.2 years ago by
Ni-Ar
▴ 10
0
votes
0
replies
1.0k
views
I need to measure distance of PAR-CLIP data to RNA regions
parclip
bedtools
bed files
gff3
6.5 years ago
linuxborg2
• 0
1
vote
1
reply
1.6k
views
Filtering a BED file according to genomic annotation
bed files
bedtools
filtering
chipseq
updated 6.5 years ago by
Aaron Lun
★ 28k • written 6.5 years ago by
rbronste
▴ 60
0
votes
4
replies
1.4k
views
Error: HelloRanges eval
HelloRanges
bedtools
7.1 years ago
bioinf
▴ 10
2
votes
7
replies
2.1k
views
Minimum overlap for summarizeOverlaps() to call hit
summarizeoverlaps
bedtools
8.3 years ago
tmartinez
• 0
6 results • Page
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Comment: limma comparison for small sample size and how to get covariance matrix
by
Gordon Smyth
51k
Your MDS plot is better than before, but you are still not following the recommendation for making for making such plots given in the limma…
Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Also, ``` > result <- mapUniProt( from = "EMBL-GenBank-DDBJ_CDS", to = "UniProtKB", query = c("ACF95883.1") ) > result From…
Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Ugh, here's the link https://www.uniprot.org/id-mapping/uniprotkb/dd08aa16774d98ef087dc3bd708582012bba49e2/overview?fields=accession%2Cre…
Answer: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
The input should be 'EMBL-GenBank-DDBJ_CDS", as that is a GenBank ID.
Answer: XCMS2 of orbitrap data
by
Elodie
• 0
Hi, I have the same question, I have acquired MS2 data with PRM analysis and inclusion lists of several ions. I have a list of product ion…
Votes
Answer: EPIC array hg38 annotation?
Answer: Why does DESeq2 give negative log2 fold change in treatment vs control for some
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
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