Showing : bed files • reset
0
votes
7
replies
2.6k
views
Compute average score across multiple bed files
chip-seq granges R bed files
updated 6.4 years ago by • 0 • written 6.4 years ago by • 0
0
votes
0
replies
1.1k
views
I need to measure distance of PAR-CLIP data to RNA regions
parclip bedtools bed files gff3
6.9 years ago linuxborg2 • 0
1
vote
1
reply
1.9k
views
Filtering a BED file according to genomic annotation
bed files bedtools filtering chipseq
updated 7.0 years ago by ★ 28k • written 7.0 years ago by ▴ 60
0
votes
1
reply
1.2k
views
getReadCountsFromBAM including bed information
cn.mops bed files getReadCountsFromBAM
7.5 years ago Pau Marc Muñoz Torres ▴ 20
0
votes
1
reply
1.1k
views
Bioconductor RNA-seq bed file read-in/download then wavelet transform
bed files wavelet rna-seq
updated 7.7 years ago by 4.1k • written 7.7 years ago by • 0
0
votes
1
reply
1.5k
views
How to extract non-overlapping genes from a a bed file?
gene density bed files gff
8.3 years ago birdguy.saikat • 0
2
votes
3
replies
2.7k
views
import.bed fails on bed file with no scores
rtracklayer import bed files
8.7 years ago jmr • 0
0
votes
0
replies
1.1k
views
customproDB: gene fusions
fusion bed files gene fusion bed file
8.8 years ago ramaniak • 0
8 results • Page 1 of 1
Recent ...
Replies
Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
Awards • All
Popular Question to Ali Barry ▴ 40
Popular Question to gabriel.hoffman ▴ 170
Popular Question to Jenny Drnevich ★ 2.0k
Popular Question to martin.grigorov ▴ 10
Scholar to James W. MacDonald 67k
Locations • All
The city by the bay, 22 minutes ago
United Kingdom, 38 minutes ago
WEHI, Melbourne, Australia, 1 hour ago
United States, 1 hour ago
UPF, Barcelona, Spain, 3 hours ago
Traffic: 417 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6