Bioconductor Bed files

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2.6k

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chip-seq granges R bed files

updated 6.5 years ago by spotifywebplayer • 0 • written 6.5 years ago by jinseok • 0

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1.2k

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parclip bedtools bed files gff3

7.0 years ago linuxborg2 • 0

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bed files bedtools filtering chipseq

updated 7.1 years ago by Aaron Lun ★ 28k • written 7.1 years ago by rbronste ▴ 60

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1.3k

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cn.mops bed files getReadCountsFromBAM

7.6 years ago Pau Marc Muñoz Torres ▴ 20

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1.2k

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bed files wavelet rna-seq

updated 7.8 years ago by shepherl 4.1k • written 7.8 years ago by whgsnp • 0

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1.5k

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gene density bed files gff

8.5 years ago birdguy.saikat • 0

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2.7k

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rtracklayer import bed files

8.8 years ago jmr • 0

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1.2k

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fusion bed files gene fusion bed file

8.9 years ago ramaniak • 0

8 results • Page 1 of 1

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Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0

It was due to the comma. Thank you!

Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k

Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…

Answer: Restricting differential binding analysis to only TSS-proximal regions by Aaron Lun ★ 28k

Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…

Comment: Sample-specific methylation values using QSEA by User3088 • 0

Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…

Comment: input for singR function by iamin053 • 0

Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!

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Answer: Unused arguments error without used arguments in GSVA?

Unused arguments error without used arguments in GSVA?

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

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Teacher to Axel Klenk ★ 1.1k