Bioconductor Beadarraysnp

Showing : beadarraysnp • reset

vote

replies

2.2k

views

crlmm illumina beadarraysnp

updated 10.0 years ago by Matthew Ritchie ▴ 1000 • written 10.0 years ago by René ▴ 30

votes

replies

2.0k

views

SNP Normalization GO PROcess beadarraySNP SNP Normalization GO PROcess beadarraySNP

14.9 years ago Jonas Mandel ▴ 10

votes

replies

1.3k

views

beadarraySNP beadarraySNP

15.6 years ago Boris Umylny ▴ 120

votes

replies

1.4k

views

SNP Normalization Cancer Colon PROcess beadarraySNP copynumber SNP Normalization Cancer

15.8 years ago Dmitri Mouradov ▴ 20

votes

1.5k

views

geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

updated 17.4 years ago by Matt Ritchie ▴ 460 • written 17.4 years ago by Elizabeth McClellan ▴ 10

votes

replies

1.1k

views

Biobase annotate affy affyio beadarray quantsmooth beadarraySNP lumi Biobase annotate

17.6 years ago Johnstone, Alice ▴ 410

votes

1.4k

views

geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

updated 17.6 years ago by Mark Dunning ▴ 320 • written 17.6 years ago by Krys Kelly ▴ 270

votes

1.6k

views

geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

updated 17.6 years ago by Mark Dunning ▴ 320 • written 17.6 years ago by Johnstone, Alice ▴ 410

votes

replies

1.8k

views

geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

updated 17.6 years ago by Mike Smith ▴ 40 • written 17.6 years ago by Krys Kelly ▴ 270

votes

1.4k

views

Microarray Annotation geneplotter affy affyio beadarray quantsmooth beadarraySNP affy

updated 17.7 years ago by Matt Ritchie ▴ 460 • written 17.7 years ago by Keith James ▴ 10

10 results • Page 1 of 1

Recent ...

Replies

Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k

If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…

Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0

why aren't there any answers?

Comment: Too many significant genes when integrating gtex and tcga by Jane • 0

I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…

Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180

Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…

Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k

No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…

Votes

A: Unbalanced experiment with multiple samples from each patient.

Unbalanced experiment with multiple samples from each patient.

Answer: Vertical line at A=0, nothing else, on MA plot

Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct

Answer: Group-specific condition effects with individuals nested: matrix is not full ra

Awards • All

Popular Question to Matthew McCormack ▴ 180

Popular Question to James W. MacDonald 68k