Bioconductor Beadarraysnp

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crlmm illumina beadarraysnp

updated 9.9 years ago by Matthew Ritchie ▴ 1000 • written 9.9 years ago by René ▴ 30

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SNP Normalization GO PROcess beadarraySNP SNP Normalization GO PROcess beadarraySNP

14.8 years ago Jonas Mandel ▴ 10

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beadarraySNP beadarraySNP

15.5 years ago Boris Umylny ▴ 120

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SNP Normalization Cancer Colon PROcess beadarraySNP copynumber SNP Normalization Cancer

15.7 years ago Dmitri Mouradov ▴ 20

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geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

updated 17.3 years ago by Matt Ritchie ▴ 460 • written 17.3 years ago by Elizabeth McClellan ▴ 10

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Biobase annotate affy affyio beadarray quantsmooth beadarraySNP lumi Biobase annotate

17.5 years ago Johnstone, Alice ▴ 410

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geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

updated 17.5 years ago by Mark Dunning ▴ 320 • written 17.5 years ago by Krys Kelly ▴ 270

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geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

updated 17.5 years ago by Mark Dunning ▴ 320 • written 17.5 years ago by Johnstone, Alice ▴ 410

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geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

updated 17.5 years ago by Mike Smith ▴ 40 • written 17.5 years ago by Krys Kelly ▴ 270

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Microarray Annotation geneplotter affy affyio beadarray quantsmooth beadarraySNP affy

updated 17.6 years ago by Matt Ritchie ▴ 460 • written 17.6 years ago by Keith James ▴ 10

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Comment: Identifying potentially associated gene set to drug response using GSVA by kl2023gege • 0

Thanks for sharing. You gotta check out Sprunki Phase Games on [Sprunki Phase](https://sprunkiphase.net). It's a wild ride of tunes and tw…

Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

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Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

C: How does edgeR cpm function calculate log(CPM) values?

Answer: Selection of correct coefficients or contrasts in DESeq2

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