Showing : bayespeak • reset
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[bug] BayesPeak cannot deal with RangedData input
BayesPeak bug
8.2 years ago balwierz ▴ 40
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3
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1.3k
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Error in bayespeak function importing data
bayespeak
9.2 years ago Reed ▴ 10
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9
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6.5k
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ChIPseq-style peak calling for paired-end sequencing?
Chipseq DNAseq ATAC bayespeak narrowpeaks
updated 9.5 years ago by 51k • written 9.5 years ago by ▴ 140
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2.2k
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chip-seq data
ChIPSeq chipseq BayesPeak ChIPSeq chipseq BayesPeak
12.2 years ago • updated 12.1 years ago John linux-user ▴ 210
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Question about ChIPpeakAnno R package
AnnotationData annotate ChIPpeakAnno BayesPeak AnnotationData annotate ChIPpeakAnno
12.3 years ago Julie Zhu ★ 4.3k
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1.1k
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Upgrade bioconductor to version 2.6
BayesPeak BayesPeak
13.2 years ago Mary Ellen Fitzpatrick ▴ 20
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error in bayespeak function
ChIPSeq GO BSgenome BSgenome chipseq BayesPeak ChIPSeq GO BSgenome BSgenome chipseq
updated 13.3 years ago by ▴ 130 • written 13.3 years ago by ▴ 810
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1.1k
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BayesPeak and RangedData obj output
BayesPeak BayesPeak
updated 14.0 years ago by ▴ 130 • written 14.0 years ago by ▴ 30
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4
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1.8k
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BayesPeak segfault woes
BayesPeak BayesPeak
updated 14.4 years ago by ▴ 130 • written 14.4 years ago by ▴ 270
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Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0
Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…
Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k
> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0
I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…
Comment: Problem at champ.load by icecreamlover • 0
Hello! Were you able to figure this out? I am running into the same error!
Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0
Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…
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