Showing : bayespeak • reset
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[bug] BayesPeak cannot deal with RangedData input
BayesPeak bug
8.3 years ago balwierz ▴ 40
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3
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1.3k
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Error in bayespeak function importing data
bayespeak
9.3 years ago Reed ▴ 10
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9
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6.6k
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ChIPseq-style peak calling for paired-end sequencing?
Chipseq DNAseq ATAC bayespeak narrowpeaks
updated 9.5 years ago by 51k • written 9.5 years ago by ▴ 140
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8
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2.2k
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chip-seq data
ChIPSeq chipseq BayesPeak ChIPSeq chipseq BayesPeak
12.2 years ago John linux-user ▴ 210
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1.2k
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Question about ChIPpeakAnno R package
AnnotationData annotate ChIPpeakAnno BayesPeak AnnotationData annotate ChIPpeakAnno
12.3 years ago Julie Zhu ★ 4.3k
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1.1k
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Upgrade bioconductor to version 2.6
BayesPeak BayesPeak
13.2 years ago Mary Ellen Fitzpatrick ▴ 20
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2.0k
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error in bayespeak function
ChIPSeq GO BSgenome BSgenome chipseq BayesPeak ChIPSeq GO BSgenome BSgenome chipseq
updated 13.4 years ago by ▴ 130 • written 13.4 years ago by ▴ 810
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1
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1.1k
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BayesPeak and RangedData obj output
BayesPeak BayesPeak
updated 14.0 years ago by ▴ 130 • written 14.0 years ago by ▴ 30
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4
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1.8k
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BayesPeak segfault woes
BayesPeak BayesPeak
updated 14.5 years ago by ▴ 130 • written 14.5 years ago by ▴ 270
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Answer: ANOVA like approach of edgeR by Gordon Smyth 51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data by Gordon Smyth 51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix? by NB • 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
Comment: Help with RSEM counts: do I transpose matrix? by NB • 0
Thank you. If I have questions about QC/normalization, do I ask them here or ask a new question?
Votes
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
Comment: ANOVA like approach of edgeR
Answer: Detecting genomic signatures of drug resistance breast cancer in transcriptom
Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
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