Showing : bayesian • reset
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Limma without eBayes, is it indistunguishable from Ordinary Least Square?
Limma ebayes bayesian ls
updated 8 months ago by 52k • written 6.3 years ago by ▴ 10
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DSS DMLTest Prior Estimate of theta dispersion
DSS dmltest bayesian statistics methylation
6.8 years ago floriandeckert ▴ 30
1
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3
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1.7k
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Differential expressiong with two groups in BASiCS
BASiCS single-cell bayesian differential expression
updated 7.0 years ago by ▴ 10 • written 7.0 years ago by ▴ 10
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2
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1.5k
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BASiCS spike info for single cell RNA sequences or Bayesian statistics help
BASiCS bayesian single cell scrnaseq
updated 7.0 years ago by ▴ 10 • written 7.0 years ago by ▴ 10
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Post Doctoral Openings at University of Pittsburgh
Bayesian HIV Bayesian HIV
12.3 years ago Porterfield, Toni ▴ 10
7
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1
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14k
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How does limma t-test work?
Bayesian limma Bayesian limma
updated 12.4 years ago by 67k • written 12.4 years ago by ▴ 160
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1.2k
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nem package, nem.BN learning with 'continuous_Baysian' not possible
Network Bayesian nem Network Bayesian nem
12.6 years ago Siebourg Juliane ▴ 10
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1.4k
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Bioconductor 2.10 is released
Transcription Sequencing Microarray Annotation Normalization Visualization Network Bayesian
12.8 years ago Dan Tenenbaum ★ 8.2k
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6
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7.3k
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DeSeq vs current version of Cuffdiff
Sequencing Bayesian Cancer DESeq Sequencing Bayesian Cancer DESeq
updated 13.0 years ago by ▴ 290 • written 13.0 years ago by ★ 2.0k
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1.0k
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Help baySeq
Bayesian edgeR Bayesian edgeR
13.0 years ago Tina Asante Boahene ▴ 100
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2.5k
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TMM and calcNormFactors: Normalization in baySeq to match edgeR and DESeq
Normalization Bayesian edgeR baySeq DESeq Normalization Bayesian edgeR baySeq DESeq
updated 13.2 years ago by ▴ 40 • written 13.2 years ago by 52k
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2
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1.4k
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Rgraphviz produces segmentation fault when attempting to plot Bayesian Belief Networks
Bayesian graph Bayesian graph
updated 13.2 years ago by 21k • written 13.2 years ago by ▴ 20
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1.4k
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objective criterion for identification of outlying arrays by pca
Network Bayesian Cancer Network Bayesian Cancer
13.2 years ago shirley zhang ★ 1.0k
0
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10
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2.0k
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objective criterion for identification of outlying arrays by pca
Bayesian Cancer Bayesian Cancer
updated 13.3 years ago by 6.7k • written 13.3 years ago by ★ 2.0k
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3
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1.3k
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Practical utilization of SQN in ST1.0 Gene normalization.
Bayesian Cancer oligo Bayesian Cancer oligo
updated 13.3 years ago by ★ 4.2k • written 13.3 years ago by ★ 2.0k
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1.6k
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NUSE and RLE PLOTS for ST1.0 Gene chips with oligo w/o 1st quantile line
Bayesian Cancer oligo Bayesian Cancer oligo
13.3 years ago Richard Friedman ★ 2.0k
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2
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1.2k
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RELATED TO CLUSTERING
Bayesian Bayesian
updated 13.5 years ago by 21k • written 13.5 years ago by ▴ 50
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1.3k
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Pathway specific gene lists in SPIA
Bayesian Cancer Bayesian Cancer
13.6 years ago Richard Friedman ★ 2.0k
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2.4k
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Rgraphviz plot of bnlearn object with text too big
Network Bayesian Rgraphviz Network Bayesian Rgraphviz
13.6 years ago João Daniel Nunes Duarte ▴ 30
3
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3.0k
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Evidence-based guidelines for use the method="robust" option in lmFit
Microarray Normalization Bayesian Regression Cancer limma Microarray Normalization Cancer
13.7 years ago Richard Friedman ★ 2.0k
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1.3k
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Filtering out tags with low counts in DESeq and EgdeR?
Bayesian limma edgeR DESeq Bayesian limma edgeR DESeq
13.7 years ago Xiaohui Wu ▴ 280
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1.4k
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Bayesian additive regression trees (BART) for classification analysis of gene expression data
Bayesian Regression Bayesian Regression
14.0 years ago Santosh Patnaik ▴ 30
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0
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1.5k
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Bioconductor 2.7 is released
BiocViews aCGH Transcription RNASeq miRNA Microarray Normalization Network Bayesian aCGH
14.3 years ago Martin Morgan 25k
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1.1k
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Limma script - Opinions requested
Annotation Bayesian limma PROcess Annotation Bayesian limma PROcess
14.4 years ago Orfe, Lisa ▴ 20
0
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1
reply
1.2k
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Limma script - Opinions requested
Bayesian limma PROcess Bayesian limma PROcess
14.4 years ago Gordon Smyth 52k
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1.1k
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Limma script - Opinions requested
Bayesian limma PROcess Bayesian limma PROcess
14.4 years ago Orfe, Lisa ▴ 20
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0
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19k
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1000 R tutorials/Links
Sequencing Microarray Genetics Visualization Network Bayesian Classification Clustering
14.7 years ago David Lyon ▴ 340
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2
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1.2k
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Removing genes from linear model fit advice sought
Microarray Bayesian Microarray Bayesian
updated 15.0 years ago by ▴ 190 • written 15.0 years ago by ▴ 10
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0
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1.2k
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Bioconductor Digest, Vol 83, Issue 23
Bayesian ROC graph limma Bayesian ROC graph limma
15.0 years ago M. Carmen Ruiz de Villa ▴ 10
0
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1.4k
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Bioconductor 2.5 is released
Sequencing miRNA Microarray qPCR Annotation Network Bayesian Regression CGH stam Rintact
15.3 years ago Patrick Aboyoun ★ 1.6k
0
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1.3k
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Fwd: Presentation 19th June
Bayesian convert Bayesian convert
15.6 years ago Mark Robinson ★ 1.1k
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Assistant/Associate Professor Department of Biostatistics
Pathways Bayesian Cancer charm Pathways Bayesian Cancer charm
15.9 years ago Kellie J. Archer, Ph.D. ▴ 120
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3
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1.8k
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Bioconductor 2.3 is released
aCGH Sequencing miRNA Microarray Visualization Bayesian Classification Survival Yeast LPE
16.3 years ago Patrick Aboyoun ★ 1.6k
0
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1
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1.5k
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BioC 2.2 now available
SNP Microarray Genetics Annotation Preprocessing Bayesian Clustering Infrastructure Cancer
updated 16.8 years ago by ★ 1.6k • written 16.8 years ago by 25k
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898
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Questions of package "deal"
Network Bayesian Network Bayesian
16.9 years ago Tu Kang ▴ 20
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1.8k
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Senior Bioinformatics Research Scientist Position at Garvan Institute, Australia
Epigenetics Bayesian Cancer Breast Epigenetics Bayesian Cancer Breast
17.1 years ago Jean Yee Hwa Yang ▴ 130
0
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1
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1.5k
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Bioconductor 2.1 is released
SNP Microarray SAGE Annotation Bayesian Regression GUI CGH hgu95av2 graph Rgraphviz SNP
17.3 years ago Hervé Pagès 16k
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1.1k
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Problem when comparing a large experimental group versus a small control group by using SAM
Bayesian Bayesian
17.4 years ago Naomi Altman ★ 6.0k
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2
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1.3k
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analysis with no replication
Bayesian limma Bayesian limma
updated 17.6 years ago by ▴ 390 • written 17.6 years ago by ▴ 450
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1.3k
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BioC 2.0 is available
SNP Microarray Genetics Annotation Visualization Bayesian Survival GUI Cancer adme16cod
17.8 years ago Seth Falcon ★ 7.4k
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1.5k
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adjusted p values of the genes in the intersection of Venn
Bayesian limma Bayesian limma
18.2 years ago Gordon Smyth 52k
0
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0
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2.1k
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Limma weights, P values and differential expression
Normalization Bayesian Regression probe limma Normalization Bayesian Regression probe
18.4 years ago Gordon Smyth 52k
0
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3
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1.6k
views
Bayesian networks in BioC
Bayesian Bayesian
updated 18.7 years ago by ★ 2.4k • written 18.7 years ago by ▴ 320
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1.4k
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PhD Student Position in Statistics on Bayesian Methods for Integrated Genomics
Microarray Bayesian Microarray Bayesian
18.8 years ago Ivo Kwee ▴ 30
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1.3k
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PhD Student Position in Statistics in Switzerland on Bayesian Methods for Integrated Genomics
Microarray Bayesian Microarray Bayesian
18.8 years ago Ivo Kwee ▴ 30
0
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3
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2.8k
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Inherits(x,"data.frame") error in SamR
Microarray Normalization Preprocessing Bayesian Clustering TimeCourse Cancer affy vsn LPE
19.0 years ago McGee, Monnie ▴ 300
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3
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1.9k
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Timeseries loop design analysis using Limma or Maanova?
Bayesian Clustering TimeCourse timecourse oligo Bayesian Clustering TimeCourse timecourse
19.0 years ago Pete ▴ 70
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0
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1.0k
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help with bayesian network
Network Bayesian Network Bayesian
19.4 years ago goldoni ▴ 10
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0
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1.5k
views
CyberT: Paired Bayes t-test (Bayes corrected p-values)
Normalization Bayesian Normalization Bayesian
19.6 years ago Gordon Smyth 52k
0
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0
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1.1k
views
identify gene expression markers using Bayesian
Bayesian Bayesian
20.4 years ago Liu, Xin ▴ 130
50 results • Page 1 of 1
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Comment: Identifying potentially associated gene set to drug response using GSVA by kl2023gege • 0
Thanks for sharing. You gotta check out Sprunki Phase Games on [Sprunki Phase](https://sprunkiphase.net). It's a wild ride of tunes and tw…
Answer: I am having issues with bowtie2_build by James W. MacDonald 67k
Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…
Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k
Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…
Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k
FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…
Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10
I see. Thank you ATpoint!
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Answer: Unable to install nloptr
Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?
C: How does edgeR cpm function calculate log(CPM) values?
Answer: Selection of correct coefficients or contrasts in DESeq2
Answer: Selection of correct coefficients or contrasts in DESeq2
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