Bioconductor Batchcorrect

Showing : batchcorrect • reset

4

votes

6

replies

2.6k

views

limma batchcorrect warnings

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by xingxd16 ▴ 20

1 result • Page 1 of 1

Recent ...

Replies

Comment: Differential variability modelling with vst() expression by convincing.shark.jqvy • 0

Your approach to differential variability modeling using vst() looks promising! It mirrors the challenge of mastering levels in [Geometry D…

Answer: DESeq2 Heatmap by James W. MacDonald 67k

Two things. First, `scale` is already vectorized, so you don't have to use `apply`. You can instead just do `t(scale(t(mat)))` . Second, th…

Answer: Improve performance of qusage aggregateGeneSet by James W. MacDonald 67k

This support site is meant mostly to help people with questions about using Bioconductor packages rather than posting code improvements. I …

Answer: promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000 by James W. MacDonald 67k

If you use `promoters` and do not provide an argument for something that has a default, you will get the default argument. Your last call t…

Comment: org.Hs.eg.db issue by k.panov • 0

installed R on another PC, works perfectly. ergo, problem outside of R probably..... :-(

Votes

A: Processing agilent data by limma

A: Linear regression in DESeq2

Awards • All