Bioconductor Barplot

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enrichplot barplot clusterProfiler

10 months ago Eva ▴ 10

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695

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module_significance barplot WGCNA

23 months ago Sooni ▴ 10

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GO.db clusterProfiler dotplot barplot

3.3 years ago Yang • 0

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8.2k

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clusterprofiler enrichGO barplot dotplot

6.5 years ago MAP ▴ 10

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3.2k

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ggplot2 barplot gene expression gene expression

updated 9.5 years ago by James W. MacDonald 67k • written 9.5 years ago by alakatos ▴ 130

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Comment: Identifying potentially associated gene set to drug response using GSVA by kl2023gege • 0

Thanks for sharing. You gotta check out Sprunki Phase Games on [Sprunki Phase](https://sprunkiphase.net). It's a wild ride of tunes and tw…

Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Votes

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

C: How does edgeR cpm function calculate log(CPM) values?

Answer: Selection of correct coefficients or contrasts in DESeq2

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