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barplot
•
reset
2
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2
replies
1.4k
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padj-based gradient scale from barplot (clusterProfiler results) does not work properly
enrichplot
barplot
clusterProfiler
13 months ago
Eva
▴ 10
0
votes
0
replies
764
views
How to draw module significance barplot?
module_significance
barplot
WGCNA
2.2 years ago
Sooni
▴ 10
0
votes
1
reply
3.2k
views
how to sort y-axis category of GO result
GO.db
clusterProfiler
dotplot
barplot
3.5 years ago
Yang
• 0
4
votes
2
replies
8.7k
views
How to export enrichGO results for future visualization with barplot, dotplot, emapplot...
clusterprofiler
enrichGO
barplot
dotplot
6.7 years ago
MAP
▴ 10
0
votes
2
replies
3.4k
views
barplot with ggplot2 for gene expression
ggplot2
barplot
gene expression
gene expression
updated 9.7 years ago by
James W. MacDonald
68k • written 9.7 years ago by
alakatos
▴ 130
5 results • Page
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Comment: Differing results with DESeq2
by
JKim
• 0
I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for gene expressio…
Answer: CluserProfiler message "No gene can be mapped"
by
James W. MacDonald
68k
Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…
Answer: RNA-seq input to GRaNIE
by
James W. MacDonald
68k
This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…
Answer: Help using reduceSimMatrix with a custom annotation
by
sergisayolspuig
▴ 80
Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…
Answer: Analyzing TnSeq data with DESeq2
by
cold.wolverine.arku
• 0
That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…
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