Bioconductor Bam file

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R rnaseq bam file

updated 6.5 years ago by Gordon Smyth 51k • written 6.6 years ago by Merlin ▴ 10

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bam file STAR Illumina

updated 6.6 years ago by ta_awwad ▴ 10 • written 6.6 years ago by soheilazareie • 0

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bioconductor shortread bam file nucler

updated 6.8 years ago by Dario Strbenac ★ 1.5k • written 6.8 years ago by jfgout ▴ 10

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paired-end reads bam file

7.0 years ago ioannis.vardaxis ▴ 30

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bam file HIV cytosine

7.1 years ago achaillon • 0

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rsamtools bam file

updated 7.3 years ago by Martin Morgan 25k • written 7.3 years ago by seungjoon.kim • 0

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medips bam file

8.5 years ago fkuo ▴ 10

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csaw up regions bam file gain and loss of enrichment

updated 8.7 years ago by Aaron Lun ★ 28k • written 8.7 years ago by JoannaF ▴ 10

8 results • Page 1 of 1

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Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…

Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0

Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k

You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…

Answer: HilBertVis install error by James W. MacDonald 67k

It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…

Comment: Identical samples after deseq2 batch effect removal by maripane • 0

Thanks Michael for quick reply. Actually, I also questioned this but later i saw this issue happens within another cluster and different c…

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A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

A: correcting the batch effects in Limma and SVA

A: Using of limma moderated t-test with "corrected" expression matrix resulting fr

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