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Syntenet application to bacterial genome and file processing
syntenet Bacteria synteny
updated 12 months ago by ▴ 40 • written 14 months ago by • 0
2
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4
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1.7k
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GO/KEEG enrichment for non-model bacteria - help for beginner
bacteria GO KEEG RNAseq
4.6 years ago liz.marjory • 0
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1.4k
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Job: postdoc 3yrs bioinformatics bacterial population genomics: Wellington, New Zealand
bacteria evolution population genomics Job
7.4 years ago una.ren • 0
3
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2
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1.6k
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Job: Hunting for Human Infectious Agents in Cancer using data from Genomics England's 100,000 genome project : PhD Studentship @ UEA, Norwich
PhD cancer genomics bacteria pathogens Job
7.8 years ago Daniel Brewer ▴ 100
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1.8k
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Using summarizeOverlaps for bacterial genomes
summarizeoverlaps bacteria e coli unique reads
updated 8.8 years ago by ★ 6.8k • written 8.8 years ago by • 0
3
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1
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2.4k
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Tools for GO term enrichment in prokaryotes
bacteria GO enrichment
updated 9.4 years ago by ★ 7.2k • written 9.4 years ago by ▴ 20
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8
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3.4k
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RNA-seq bacterial transcriptome analysis in EdgeR with unusual dispersion trend
RNA-seq edgeR estimatedispersions bacteria
9.9 years ago Mauve • 0
7 results • Page 1 of 1
Recent ...
Replies
Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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