Bioconductor Bacteria

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779

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syntenet Bacteria synteny

updated 10 months ago by Fabricio Almeida-Silva ▴ 40 • written 12 months ago by kluongni • 0

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1.7k

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bacteria GO KEEG RNAseq

4.5 years ago liz.marjory • 0

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1.4k

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bacteria evolution population genomics Job

7.3 years ago una.ren • 0

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1.6k

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PhD cancer genomics bacteria pathogens Job

7.7 years ago Daniel Brewer ▴ 100

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1.7k

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summarizeoverlaps bacteria e coli unique reads

updated 8.7 years ago by Valerie Obenchain ★ 6.8k • written 8.7 years ago by as9309 • 0

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2.4k

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bacteria GO enrichment

updated 9.3 years ago by Marc Carlson ★ 7.2k • written 9.3 years ago by ksw ▴ 20

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3.4k

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RNA-seq edgeR estimatedispersions bacteria

9.8 years ago • updated 9.7 years ago Mauve • 0

7 results • Page 1 of 1

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Comment: How many of my genes from my gene list are in each KEGG pathway? by josephasmith1310 • 0

> You can compare the number in the column setSize versus the number of > genes in core_enrichment. The former corresponds to the number of…

Comment: EuroBioC2024 abstract submission is open! by Esperan • 0

Great information about the EuroBioC2024 conference! https://openreview.net/group?id=bioconductor.org/EuroBioC/2024/Conferences [slope](htt…

Answer: Combining RNAseq and microarray data using edgeR/limma-voom by Gordon Smyth 51k

I agree with James, although I tend to combine analyses using geneset tests rather than by meta analysis tools like GeneMeta. > My questio…

Comment: Adjusted p-values become NA when sub-setting samples by txema.heredia • 0

Thanks! I've been looking into DESeq2's code and, indeed, I get matching results when running manually the code inherited from the `genefi…

Answer: DESeq2 interaction between cancer cells and microenvironment cells by Michael Love 42k

I don't really know what you mean by "come from the contamination". You can look at the main effects and the interaction, but I don't know …

Votes

A: p.adjust BH generates duplicate values

Answer: Adjusted p-values become NA when sub-setting samples

Comment: Suggestion for FGSEA and GSEA creation for C57BL/6J Mice

Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim

A: How does edgeR cpm function calculate log(CPM) values?

Awards • All

Supporter to Paul Harrison ▴ 100

Popular Question to Mikhail Dozmorov ▴ 30