Bioconductor Background correction

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agilent single channel plotMA background correction

updated 6.9 years ago by Gordon Smyth 52k • written 6.9 years ago by CantExitVIM ▴ 10

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2.4k

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normalization background correction

updated 7.8 years ago by DataFanatic ▴ 10 • written 9.9 years ago by dimitri.leonid.lindenwald ▴ 50

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1.6k

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agilent microarrays background correction

updated 8.3 years ago by Gordon Smyth 52k • written 8.3 years ago by ragavendrasamy.b • 0

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4.8k

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limma agilent offset background correction microarray

updated 9.2 years ago by James W. MacDonald 68k • written 9.2 years ago by Konstantinos Yeles ▴ 80

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1.3k

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gcrma normalization background correction microarray

9.4 years ago svlachavas ▴ 840

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3.0k

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illumina human ht-12 v4 limma background correction BeadStudio microarray

updated 9.5 years ago by Gordon Smyth 52k • written 9.5 years ago by svlachavas ▴ 840

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1.0k

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Normalization background correction

updated 10.1 years ago by Gordon Smyth 52k • written 17.6 years ago by Bandyopadhyay, Somnath Som ▴ 60

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Comment: Design formula for circadian time-course data for vst() function by Vishnu • 0

Thank you so much for your reply.

Comment: Analyzing TnSeq data with DESeq2 by Tom • 0

[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…

Answer: Design formula for circadian time-course data for vst() function by ATpoint ★ 4.8k

This was asked before: https://support.bioconductor.org/p/9148734/#9148812 Take-home message is that influence is minor, as you see your…

Comment: Filtering after DESeq by caroline.zanchi • 0

... I did it. It does filter out quite a bit of genes : ``` keep <- filterByExpr(dds, group="host_treatment_generation",min.count = 10, mi…

Comment: Module membership vs gene significance result and Modules-trait relationships re by Vinaya • 0

Hi. I am having the same issue, and haven't found a solution still.

Votes

Answer: CluserProfiler message "No gene can be mapped"

A: Minfi issue: return code from pthread_create() is 22

Comment: Filtering after DESeq

Answer: DiffBind; Error: No sites have activity greater than filter value

DiffBind; Error: No sites have activity greater than filter value

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