Bioconductor Background correction

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agilent single channel plotMA background correction

updated 6.5 years ago by Gordon Smyth 52k • written 6.5 years ago by CantExitVIM ▴ 10

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2.3k

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normalization background correction

updated 7.3 years ago by DataFanatic ▴ 10 • written 9.5 years ago by dimitri.leonid.lindenwald ▴ 50

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1.5k

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agilent microarrays background correction

updated 7.9 years ago by Gordon Smyth 52k • written 7.9 years ago by ragavendrasamy.b • 0

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4.4k

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limma agilent offset background correction microarray

updated 8.8 years ago by James W. MacDonald 67k • written 8.8 years ago by Konstantinos Yeles ▴ 80

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1.2k

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gcrma normalization background correction microarray

9.0 years ago svlachavas ▴ 840

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2.7k

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illumina human ht-12 v4 limma background correction BeadStudio microarray

updated 9.1 years ago by Gordon Smyth 52k • written 9.1 years ago by svlachavas ▴ 840

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992

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Normalization background correction

updated 9.7 years ago by Gordon Smyth 52k • written 17.1 years ago by Bandyopadhyay, Somnath Som ▴ 60

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Answer: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data by Aaron Lun ★ 28k

You don't mention how your matrix data is being represented, but if it's a file-backed matrix (e.g., `HDF5Matrix` or one of its variants, b…

Comment: contrast matrix design for a continuous variable by dtzhu337 • 0

Thank you, Gordon. X is time splines for time point, and yes, it's needed. However, I was also thinking to incorporate time point with se…

Answer: contrast matrix design for a continuous variable by Gordon Smyth 52k

Yes, the design and contrasts are correct. Your analysis is also adjusted for covariates defined by X, which I assume is what you want to …

Comment: fail to use addPerROIQC in Rmd by liu.n • 0

That's odd. So it can run successfully within markdown but would be failed when knitting?

Comment: fail to use addPerROIQC in Rmd by joseph.joonsang • 0

> dim(spe) [1] 19962 425

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Answer: contrast matrix design for a continuous variable

A: What's the difference between p.adjust and qvalue?

Answer: DESeq2- merging technical vs biological replicates

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

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Popular Question to Ou, Jianhong ★ 1.3k