Bioconductor Background correction

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1.3k

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agilent single channel plotMA background correction

updated 6.8 years ago by Gordon Smyth 52k • written 6.8 years ago by CantExitVIM ▴ 10

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2.4k

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normalization background correction

updated 7.7 years ago by DataFanatic ▴ 10 • written 9.8 years ago by dimitri.leonid.lindenwald ▴ 50

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1.5k

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agilent microarrays background correction

updated 8.2 years ago by Gordon Smyth 52k • written 8.2 years ago by ragavendrasamy.b • 0

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4.8k

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limma agilent offset background correction microarray

updated 9.2 years ago by James W. MacDonald 68k • written 9.2 years ago by Konstantinos Yeles ▴ 80

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1.3k

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gcrma normalization background correction microarray

9.4 years ago svlachavas ▴ 840

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2.9k

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illumina human ht-12 v4 limma background correction BeadStudio microarray

updated 9.4 years ago by Gordon Smyth 52k • written 9.4 years ago by svlachavas ▴ 840

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1.0k

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Normalization background correction

updated 10.0 years ago by Gordon Smyth 52k • written 17.5 years ago by Bandyopadhyay, Somnath Som ▴ 60

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Comment: DiffBind can't find a DAR by ATpoint ★ 4.8k

"My cake does not look as advertised in the recipe", with this sloppy sentence I hope you understand that you need to give people details, …

Comment: DESeq - help with pair wise comparisons by bd2000 ▴ 30

Follow up question, is this the correct way to extract results? ```r results <- results(ddsObj, list(c("GroupControl.Followup", "GroupTrea…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ktz • 0

Thank you for your reply! I would love to know your thoughts on the plots I've included above. > 'Are the differences between groups lar…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ktz • 0

I also realised that the other gene I pointed out that was flagged as DE but had similar count differences also shows that rep1 is lower th…

Comment: DESeq - help with pair wise comparisons by bd2000 ▴ 30

Thanks that's great!! I've followed the instructions from the link you sent, is my code correct? By correct I mean, is my code comparing fo…

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Comment: DESeq - help with pair wise comparisons

Answer: Is random access by row index possible for an indexed VCF file?

Answer: SingleR with multiple single cell references

Awards • All

Scholar to Aaron Lun ★ 28k

Scholar to James W. MacDonald 68k