Showing : ath1121501 • reset
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Extracting genes associated to GO terms
GO ath1121501 GO ath1121501
updated 11.3 years ago by 68k • written 11.3 years ago by ★ 13k
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1.2k
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Visualization and Interpretation of Go Terms
GO ath1121501 GO ath1121501
updated 11.8 years ago by 68k • written 11.8 years ago by ★ 13k
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723
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missing probe_id in ath1121501.db
GO ath1121501 GO ath1121501
12.2 years ago Guest User ★ 13k
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4
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1.3k
views
GO Term Enrichment Analysis for ath1121501
Annotation GO ath1121501 probe Annotation GO ath1121501 probe
12.2 years ago Guest User ★ 13k
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788
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ToggleProbe() and Arabidopsis annotation file ath1121501.db.
ath1121501 probe AnnotationDbi ath1121501 probe AnnotationDbi
updated 14.2 years ago by ★ 7.2k • written 14.2 years ago by ▴ 60
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3.1k
views
topGO and Arabidopsis data
Annotation GO ath1121501 topGO Annotation GO ath1121501 topGO
updated 14.2 years ago by ▴ 400 • written 14.2 years ago by ▴ 30
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1.4k
views
BioMaRt query
ath1121501 annotate ath1121501 annotate
updated 14.4 years ago by 68k • written 14.4 years ago by ▴ 80
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4
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1.9k
views
how to unlock a package environment
Annotation Arabidopsis thaliana ath1121501 genefilter Annotation Arabidopsis thaliana
updated 15.4 years ago by ★ 7.2k • written 15.4 years ago by ▴ 170
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795
views
Problem with negative gene locations
Microarray ath1121501 Microarray ath1121501
15.6 years ago Naira Naouar ▴ 40
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3
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1.5k
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Problem with hyperGTest using ath1121501.db
Annotation GO ath1121501 Annotation GO ath1121501
15.8 years ago Ulrike Goebel ▴ 110
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2
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1.6k
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Error when trying to build a package that needs to import GO.db, GOstats, ath1121501.db packages
Annotation GO Cancer ath1121501 AnnotationDbi BHC Annotation GO Cancer ath1121501 BHC
updated 16.3 years ago by ▴ 60 • written 16.3 years ago by 25k
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Error when trying to build a package that needs to import GO.db, GOstats, ath1121501.db packages
Annotation GO ath1121501 BHC Annotation GO ath1121501 BHC
16.3 years ago Rich Savage ▴ 60
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5
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1.4k
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Arabidopsis chromosome location mappings
Organism ath1121501 Organism ath1121501
updated 16.4 years ago by ▴ 10 • written 16.4 years ago by ▴ 330
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5
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1.7k
views
Encountering error when using GOstats package
GO ath1121501 GOstats GO ath1121501 GOstats
updated 16.4 years ago by 6.7k • written 16.4 years ago by ▴ 60
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3
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1.1k
views
help with ath1121501
GO ath1121501 GO ath1121501
updated 18.3 years ago by ★ 7.4k • written 18.3 years ago by ▴ 70
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857
views
ath1121501 and GO
GO ath1121501 GO ath1121501
updated 18.3 years ago by 68k • written 18.3 years ago by ▴ 70
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1.4k
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annotation data packages in BioC1.9
Annotation adme16cod ath1121501 h10kcod h20kcod hi16cod hs25kresogen hwgcod m10kcod cdf
18.4 years ago Nianhua Li ▴ 870
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1.1k
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GOstats and library ath1121501
ath1121501 hgu95av2 GOstats ath1121501 hgu95av2 GOstats
updated 18.5 years ago by ★ 7.4k • written 18.5 years ago by ▴ 70
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1
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1.4k
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GO annotation/analysis for ath1121501
Annotation GO ath1121501 goTools GOstats biomaRt Annotation GO ath1121501 goTools
updated 18.5 years ago by ▴ 870 • written 18.5 years ago by ▴ 340
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809
views
ath1121501 package updated?
ath1121501 ath1121501
updated 19.1 years ago by ▴ 780 • written 19.1 years ago by ▴ 810
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982
views
PLIER affinities redux
ath1121501 cdf probe Biobase affy plier ath1121501 cdf probe Biobase affy plier
19.3 years ago Matthew Hannah ▴ 940
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1.1k
views
GOHyperG function with ath1121501
ath1121501 ath1121501
updated 19.7 years ago by ★ 5.5k • written 19.7 years ago by ★ 1.7k
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4
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1.3k
views
annotation for ath1121501 (?)
Annotation ath1121501 Annotation ath1121501
updated 20.0 years ago by ▴ 120 • written 20.0 years ago by ▴ 90
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4
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1.2k
views
altcdfenvs
ath1121501 cdf probe ath1121501 cdf probe
updated 20.3 years ago by ▴ 900 • written 20.3 years ago by ▴ 60
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937
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cdf vs probe package & Linux vs PC
ath1121501 cdf probe affy ath1121501 cdf probe affy
updated 20.8 years ago by ★ 13k • written 20.8 years ago by ▴ 90
25 results • Page 1 of 1
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Comment: WGCNA coupled with differential expression analysis: question about baseline mod by hetaf16210 • 0
@[slope][1] If feasible, consider conducting both analyses. Start with a pooled analysis to identify broad patterns, then conduct separate …
Comment: DESeq2 adujsted p-value cutoff seemingly not working by 980linnet • 0
Stuck on DESeq2 with alpha=.05 for padj cutoff. Can't seem to get the differential expression analysis to stick the landing - it's like try…
Comment: internal error in trio library when trying to use lfmm() in LEA package by PW • 0
>ERROR: unable to open file D://anole_geno.snmf/K1/run1/anole_geno_r1.1.Q. Please, check that the name of the file you provided is correct.…
Comment: DESeq2 adujsted p-value cutoff seemingly not working by Guilherme • 0
Thank you for your answer So the proper way to conduct the analysis is to put the filters in the results() function and later filter the da…
Comment: DiffBind - observation that the default union overlap is actually a gap of 1 bp by Ian D. ▴ 70
Please can you comment on this @rory.
Votes
A: how to extract Granges not overlapping with other ganges?
DESeq2 1.20.0 lfcshrink function
A: LIMMA on RT-PCR data
Answer: Efficiently working with HDF5-backed SingleCellExperiments
Efficiently working with HDF5-backed SingleCellExperiments
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