Showing : atacseqqc • reset
1
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368
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Error with BSgenome, wanting to analyse non-model species with ATACseqQC
ATACseqQC
updated 8 months ago by 67k • written 8 months ago by • 0
0
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0
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304
views
Issue with shiftGAlignmentsList() in ATACseqQC after updating
R ATACseqQC
8 months ago danalvoronov ▴ 10
0
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7
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1.1k
views
ATACseqQC shiftGAlignmentsList() problem
ATACseqQC ATACSeq
updated 8 months ago by ▴ 10 • written 11 months ago by • 0
0
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1
reply
765
views
Error in ATACseqQC bamQC analysis
ATACSeq ATACseqQC
updated 22 months ago by ★ 1.3k • written 22 months ago by • 0
0
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0
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776
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[ATACseqQC] NA values in sigs makes heatmap not completed
ATACseqQC ATACSeq
2.7 years ago hyjforesight • 0
1
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7
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1.7k
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TSSEscore function in ATACseqQC package
ATACseqQC
2.8 years ago Liu Yu-Yu • 0
0
votes
3
replies
1.4k
views
package for ATACseq data analysis
SequencingData ATACSeq ATACseqQC
updated 2.3 years ago by ★ 5.2k • written 3.1 years ago by ▴ 40
0
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0
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555
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ATACseqQC function fragSizeDist returns error
fragSizeDist ATACseqQC
3.2 years ago xuyao15927402897 • 0
0
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0
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629
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NAs in TSSE for certain windows
ATACseqQC
3.2 years ago red_bricks ▴ 60
0
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2
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1.7k
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*** caught segfault *** address 0xffffffff9a378e20, cause 'memory not mapped'
ATACseqQC
3.4 years ago Nolan • 0
0
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9
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4.3k
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No peak corresponding to the nucleosome-free regions is observed in Fragment size distribution of ATAC-seq
ATACseqQC Fragmentsizedistribution ATAC-seq
3.6 years ago • updated 3.5 years ago Xiaojie Cheng • 0
1
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4
replies
1.3k
views
How to use a fimo BED output as GRanges object in factorFootprints from ATACseqQC
ATACseqQC
updated 4.2 years ago by ★ 4.3k • written 4.2 years ago by ▴ 10
0
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4
replies
2.3k
views
ATACseqQC R package for QC scores (TSS, FRIP, NFR, IDR)
ATACseqQC atacseq R
updated 4.2 years ago by ★ 1.3k • written 4.3 years ago by • 0
1
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2
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11k
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Interpreting TSS Enrichment Score Summary
atacseq atacseqqc tss enrichment
updated 4.3 years ago by ★ 1.3k • written 4.3 years ago by • 0
1
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4
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1.1k
views
Subsampling when adjusting the read start sites in the ATACseqQC guide
atacseqqc r
4.3 years ago Arpi Beshlikyan • 0
0
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5
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1.7k
views
ATACSeqQC - error when splitting files using mm10
atacseqqc atac-seq R bioconductor rsamtools
updated 4.5 years ago by ★ 4.0k • written 4.5 years ago by • 0
0
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5
replies
1.9k
views
ATACseqQC installation fails at shiny step
ATACseqQC
updated 5.2 years ago by 67k • written 5.2 years ago by • 0
0
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2
replies
1.1k
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factorFootprints, bindingSites and Profile.segmentation
ATACSeqQC factorFootprints
updated 5.3 years ago by ★ 4.3k • written 5.3 years ago by • 0
1
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2
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1.6k
views
ATACseqQC function bamSplit returns error when input .bam is from mouse
ATACseqQC
5.3 years ago beiting ▴ 30
1
vote
11
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2.7k
views
ATAC-QC shiftGAlignmentsList function
ATAC-seq ATACseqQC
updated 5.4 years ago by ★ 4.3k • written 5.4 years ago by • 0
0
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7
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1.9k
views
ATACseqQC splitGAlignmentsByCut: strand values must be in '+' '-' '*'
ATACseqQC R
updated 5.4 years ago by ★ 4.3k • written 5.4 years ago by • 0
0
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1
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1.2k
views
ATAC-QC fragSizeDist function
ATAC-seq ATACseqQC
updated 5.4 years ago by ★ 4.3k • written 5.4 years ago by • 0
0
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7
replies
2.1k
views
ATACseqQC shiftGAlignmentsList leads to (all(elementNROWS)>3) is not TRUE error
ATACseqQC ATAC ATACseq software error Tutorial
updated 5.4 years ago by ★ 13k • written 5.4 years ago by • 0
0
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6
replies
2.2k
views
atacseqQC error while splittin the bamfile
ATACseqQC ATAC-seq error split bam file
updated 5.5 years ago by • 0 • written 5.6 years ago by ▴ 10
0
votes
0
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914
views
Enough cell number or not based on library complexity evaluation by ATACseqQC?
ATACseqQC ATAC-Seq Library complexity estimateLibComplexity
5.7 years ago Gary ▴ 20
2
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5
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1.7k
views
The meaning of results produced by the bamQC function implemented in the ATACseqQC
ATACseqQC bamQC ATAC-Seq totalQNAMEs MAPQ
updated 5.7 years ago by ★ 4.3k • written 5.8 years ago by ▴ 20
11
votes
21
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5.8k
views
How about our ATAC-Seq data quality analyzed by ATACseqQC
ATACseqQC ATAC-Seq quality analysis fragment size distribution library complexity
updated 5.8 years ago by ★ 4.3k • written 5.8 years ago by ▴ 20
0
votes
3
replies
1.2k
views
Compare the DNA footprinting between different samples when using ATACseqQC
atacseqqc
updated 6.3 years ago by ★ 1.3k • written 6.3 years ago by ▴ 10
0
votes
9
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1.8k
views
use factorFootprints function in ATACseqQC to get DNA footprinting for certain gene region
ATACseqQC
updated 6.4 years ago by ★ 4.3k • written 6.4 years ago by ▴ 10
0
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1
reply
1.2k
views
ATACseqQC: a few questions
ATACseqQC
updated 6.4 years ago by ★ 4.3k • written 6.4 years ago by • 0
0
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1
reply
1.0k
views
ATACseqQC questions in R language
atacseqqc
updated 6.5 years ago by ★ 1.3k • written 6.5 years ago by • 0
0
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1
reply
1.9k
views
Issue installing packages ATACseqQC and GO.db
GO.db biocinstaller package installation atacseqqc
updated 6.7 years ago by ★ 1.3k • written 6.7 years ago by • 0
0
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7
replies
2.5k
views
ATACseqQC memory overflow issue
atac-seq software error atacseqqc
updated 6.8 years ago by • 0 • written 6.8 years ago by ▴ 10
0
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2
replies
1.2k
views
ATACseqQC needs too much memory
ATACseqQC
updated 7.0 years ago by ★ 4.3k • written 7.0 years ago by • 0
5
votes
9
replies
4.3k
views
mm10 phastCons data for use with ATACseqQC
ATACseqQC bsgenome phastcons rtracklayer
updated 7.5 years ago by ★ 1.3k • written 7.5 years ago by ▴ 10
35 results • Page 1 of 1
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Answer: HilBertVis install error by James W. MacDonald 67k
It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…
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Thanks Michael for quick reply. Actually, I also questioned this but later i saw this issue happens within another cluster and different c…
Answer: Identical samples after deseq2 batch effect removal by Michael Love 42k
> 2 of my treatment samples have identical normalised gene expression for all genes. This sounds like a quantification / sample labeling…
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I'm sorry I missed the first post! Yes, it is easy to agglomerate ranks in curatedMetagenomicData datasets. See the example in the vignette…
Comment: Differene between the Wald and LRT test for time-series gene expression data by Denise • 0
This makes a lot of sense, thank you very much!
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