Bioconductor Atac

Showing : atac • reset

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536

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ATACSeq peaks ATAC ChIPpeakAnno

8 months ago Raghad • 0

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1.1k

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rna-seq Read10X_h5 atac modalities

updated 22 months ago by James W. MacDonald 67k • written 22 months ago by Cynthia • 0

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901

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ATAC DiffBind ATACSeq

updated 23 months ago by Rory Stark ★ 5.2k • written 2.0 years ago by Hadar • 0

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diffbind atac

updated 4.7 years ago by Rory Stark ★ 5.2k • written 4.7 years ago by lindsaynhayes • 0

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699

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r DiffBind ATAC

updated 4.9 years ago by Rory Stark ★ 5.2k • written 4.9 years ago by lindsaynhayes • 0

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1.9k

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limma edger atac atac-seq

updated 4.9 years ago by Aaron Lun ★ 28k • written 4.9 years ago by pgugger ▴ 70

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950

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deseq2 design formula design matrix edgeR ATAC

updated 5.1 years ago by Gordon Smyth 52k • written 5.2 years ago by corinne_hutfilz • 0

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1.2k

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Diffbind ATAC batch correction blocking factor

updated 5.5 years ago by Rory Stark ★ 5.2k • written 5.5 years ago by rm1238 • 0

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ATACseqQC ATAC ATACseq software error Tutorial

updated 5.6 years ago by Steve Lianoglou ★ 13k • written 5.6 years ago by mbasam • 0

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3.6k

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subread featurecounts atac

updated 5.8 years ago by Wei Shi ★ 3.6k • written 5.8 years ago by aurel.nagy ▴ 10

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diffbind ATACseq ATAC counts differential analysis

updated 5.9 years ago by Rory Stark ★ 5.2k • written 5.9 years ago by pgontarz ▴ 10

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2.6k

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diffbind atac

updated 6.0 years ago by Rory Stark ★ 5.2k • written 6.0 years ago by paz2005 • 0

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diffbind atac

7.7 years ago niu.shengyong ▴ 10

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5.1k

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ATAC differential binding analysis no replicates DEseq2 chromatin

7.9 years ago BioinfGuru ▴ 70

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1.6k

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Diffbind Atac adapters

updated 7.9 years ago by Rory Stark ★ 5.2k • written 7.9 years ago by BioinfGuru ▴ 70

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atac-seq atac deseq2 sva combat

updated 7.9 years ago by Michael Love 43k • written 7.9 years ago by g.atla ▴ 10

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6.7k

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Chipseq DNAseq ATAC bayespeak narrowpeaks

updated 9.7 years ago by Gordon Smyth 52k • written 9.7 years ago by samuel collombet ▴ 140

17 results • Page 1 of 1

Recent ...

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Answer: Using genomicRanges / plyranges to calculate score of peaks within intervals by Michael Love 43k

This should be possible with plyranges using `join_overlap` and `group_by` on the metadata from the tile. E.g. create `tile.id` as a variab…

Answer: Reducing and aggregating GRanges with gaps using plyranges by Michael Love 43k

I added `min.gapwidth` to `reduce_ranges()` in recent plyranges releases: https://github.com/tidyomics/plyranges/pull/105

Answer: Find exact GRanges match keeping metadata columns by Michael Love 43k

You could use `minoverlap` but that requires an integer, not a fraction: ``` gr1 |> join_overlap_left(gr2, minoverlap=6) ``` Plyranges do…

Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0

It was due to the comma. Thank you!

Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k

Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…

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Answer: Unused arguments error without used arguments in GSVA?

Unused arguments error without used arguments in GSVA?

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

Awards • All

Teacher to Axel Klenk ★ 1.1k