Bioconductor Atac

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714

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ATACSeq peaks ATAC ChIPpeakAnno

11 months ago Raghad • 0

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1.3k

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rna-seq Read10X_h5 atac modalities

updated 2.1 years ago by James W. MacDonald 68k • written 2.1 years ago by Cynthia • 0

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987

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ATAC DiffBind ATACSeq

updated 2.2 years ago by Rory Stark ★ 5.2k • written 2.2 years ago by Hadar • 0

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1.6k

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diffbind atac

updated 4.9 years ago by Rory Stark ★ 5.2k • written 4.9 years ago by lindsaynhayes • 0

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738

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r DiffBind ATAC

updated 5.2 years ago by Rory Stark ★ 5.2k • written 5.2 years ago by lindsaynhayes • 0

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2.1k

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limma edger atac atac-seq

updated 5.2 years ago by Aaron Lun ★ 28k • written 5.2 years ago by pgugger ▴ 70

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deseq2 design formula design matrix edgeR ATAC

updated 5.4 years ago by Gordon Smyth 52k • written 5.4 years ago by corinne_hutfilz • 0

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1.2k

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Diffbind ATAC batch correction blocking factor

updated 5.7 years ago by Rory Stark ★ 5.2k • written 5.7 years ago by rm1238 • 0

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2.3k

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ATACseqQC ATAC ATACseq software error Tutorial

updated 5.9 years ago by Steve Lianoglou ★ 13k • written 5.9 years ago by mbasam • 0

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3.9k

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subread featurecounts atac

updated 6.1 years ago by Wei Shi ★ 3.6k • written 6.1 years ago by aurel.nagy ▴ 10

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diffbind ATACseq ATAC counts differential analysis

updated 6.1 years ago by Rory Stark ★ 5.2k • written 6.1 years ago by pgontarz ▴ 10

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diffbind atac

updated 6.2 years ago by Rory Stark ★ 5.2k • written 6.2 years ago by paz2005 • 0

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diffbind atac

7.9 years ago niu.shengyong ▴ 10

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5.3k

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ATAC differential binding analysis no replicates DEseq2 chromatin

8.1 years ago BioinfGuru ▴ 70

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1.6k

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Diffbind Atac adapters

updated 8.1 years ago by Rory Stark ★ 5.2k • written 8.1 years ago by BioinfGuru ▴ 70

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atac-seq atac deseq2 sva combat

updated 8.2 years ago by Michael Love 43k • written 8.2 years ago by g.atla ▴ 10

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6.9k

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Chipseq DNAseq ATAC bayespeak narrowpeaks

updated 9.9 years ago by Gordon Smyth 52k • written 10.0 years ago by samuel collombet ▴ 140

17 results • Page 1 of 1

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Comment: Design formula for circadian time-course data for vst() function by Vishnu • 0

Thank you so much for your reply.

Comment: Analyzing TnSeq data with DESeq2 by Tom • 0

[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…

Answer: Design formula for circadian time-course data for vst() function by ATpoint ★ 4.8k

This was asked before: https://support.bioconductor.org/p/9148734/#9148812 Take-home message is that influence is minor, as you see your…

Comment: Filtering after DESeq by caroline.zanchi • 0

... I did it. It does filter out quite a bit of genes : ``` keep <- filterByExpr(dds, group="host_treatment_generation",min.count = 10, mi…

Comment: Module membership vs gene significance result and Modules-trait relationships re by Vinaya • 0

Hi. I am having the same issue, and haven't found a solution still.

Votes

Answer: CluserProfiler message "No gene can be mapped"

A: Minfi issue: return code from pthread_create() is 22

Comment: Filtering after DESeq

Answer: DiffBind; Error: No sites have activity greater than filter value

DiffBind; Error: No sites have activity greater than filter value

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