Showing : assign • reset
1
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1.5k
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Limma and Names Assignment
ASSIGN ASSIGN
written 13.4 years ago by ▴ 760
0
votes
0
replies
817
views
Error in data.frame(ASSIGN = "ASSIGN parameters", version = as.character(utils::packageVersion("ASSIGN")), : arguments imply differing number of …
software error assign
4.7 years ago yueli7 ▴ 20
0
votes
2
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1.2k
views
LIMMA: how to assign file name
limma ASSIGN limma ASSIGN
updated 6.1 years ago by 0 • written 19.8 years ago by ▴ 180
0
votes
11
replies
4.1k
views
SNP6 data to VCF
SNP oligo ASSIGN SNP oligo ASSIGN
updated 6.5 years ago by • 0 • written 13.1 years ago by 21k
0
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1
reply
1.2k
views
Query regarding DESeq
DESeq ASSIGN DESeq ASSIGN
updated 10.6 years ago by ★ 13k • written 10.6 years ago by ▴ 10
0
votes
5
replies
4.7k
views
annotating microarray data with mogene10stv1
Microarray Annotation annotate limma ASSIGN Microarray Annotation annotate limma ASSIGN
updated 10.6 years ago by 68k • written 10.6 years ago by ▴ 70
0
votes
8
replies
3.5k
views
Annotation files for bacterial genome RNAseq
Alignment Annotation ASSIGN Alignment Annotation ASSIGN
updated 10.7 years ago by 68k • written 10.7 years ago by ▴ 80
0
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2
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1.4k
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error on detecting regions
ASSIGN ASSIGN
updated 10.7 years ago by ▴ 440 • written 10.7 years ago by ★ 13k
0
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4
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1.7k
views
GenomicRanges select parameter
GenomicRanges ASSIGN GenomicRanges ASSIGN
updated 10.7 years ago by ▴ 30 • written 10.7 years ago by ★ 11k
0
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1
reply
2.7k
views
DataFrame(..., check.names=F); colnames change when assign data using '[[', not when using '[,]'
ASSIGN ASSIGN
updated 10.8 years ago by ★ 11k • written 10.8 years ago by ▴ 40
0
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3
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1.4k
views
Dealing with probes with high fold change but PA call 0
Clustering probe ASSIGN Clustering probe ASSIGN
updated 11.2 years ago by ★ 13k • written 11.2 years ago by ▴ 230
0
votes
5
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2.6k
views
Single-channel GenePix analysis with Limma (bg correction, normalization, weights)
Microarray Normalization vsn limma ASSIGN Microarray Normalization vsn limma ASSIGN
updated 11.3 years ago by 52k • written 11.3 years ago by ▴ 40
0
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1
reply
1.5k
views
ChIPpeakAnno
ChIPpeakAnno ASSIGN ChIPpeakAnno ASSIGN
11.7 years ago Julie Zhu ★ 4.3k
0
votes
2
replies
4.2k
views
From location to get the SNP rs ID
SNP Cancer SNPlocs ASSIGN SNP Cancer SNPlocs ASSIGN
updated 11.7 years ago by 16k • written 11.7 years ago by ▴ 970
0
votes
1
reply
1.9k
views
Fwd: feature weights in 'superpc' package
Survival ASSIGN Survival ASSIGN
updated 11.8 years ago by ★ 4.2k • written 11.8 years ago by ▴ 10
0
votes
5
replies
2.2k
views
Question regarding cellhts2 output
Normalization Visualization PROcess cellHTS2 ASSIGN Normalization Visualization PROcess
11.9 years ago maziz@tgen.org ▴ 70
0
votes
1
reply
1.3k
views
fRMA for Gene ST arrays
affy oligo frma ASSIGN affy oligo frma ASSIGN
updated 11.9 years ago by ▴ 830 • written 11.9 years ago by ▴ 100
0
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0
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1.2k
views
how to use color to represent significant changed genes in maPlot of edgeR
ASSIGN ASSIGN
12.0 years ago wang peter ★ 2.0k
0
votes
5
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2.4k
views
yieldSize and paired end data in SummarizeOverlaps error?
BSgenome PROcess BSgenome ASSIGN BSgenome PROcess BSgenome ASSIGN
updated 12.0 years ago by ★ 6.8k • written 12.0 years ago by ▴ 10
0
votes
0
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965
views
Finding genes with minimal expression across a set of conditions?
ASSIGN ASSIGN
12.0 years ago Ryan C. Thompson ★ 7.9k
0
votes
0
replies
1.7k
views
Classification in Mass Spectrometry Data
Microarray Classification Cancer Ovarian PROcess MLInterfaces ASSIGN Microarray Cancer
12.3 years ago McGee, Monnie ▴ 300
0
votes
2
replies
1.6k
views
Question regarding cellhts2 output
Normalization cellHTS2 ASSIGN Normalization cellHTS2 ASSIGN
12.6 years ago maziz@tgen.org ▴ 70
0
votes
12
replies
2.5k
views
Newbie methylation and stats question
probe ASSIGN probe ASSIGN
updated 12.7 years ago by ★ 4.2k • written 12.7 years ago by ▴ 440
0
votes
0
replies
2.9k
views
qrqc with error message of "unable to start device PNG" and "unable to open connection to X11 display"?
GO qrqc ASSIGN GO qrqc ASSIGN
12.8 years ago Sang Chul Choi ▴ 230
0
votes
4
replies
1.8k
views
edgeR: design matrix
ASSIGN ASSIGN
updated 12.8 years ago by 52k • written 12.8 years ago by ▴ 420
0
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4
replies
3.8k
views
edgeR : input and design matrix help
edgeR ASSIGN edgeR ASSIGN
12.8 years ago KJ Lim ▴ 420
0
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0
replies
1.3k
views
edgeR input and design matrix help
edgeR ASSIGN edgeR ASSIGN
12.8 years ago KJ Lim ▴ 420
0
votes
0
replies
1.2k
views
problems with oneChannelGUI
affylmGUI oneChannelGUI ASSIGN affylmGUI oneChannelGUI ASSIGN
12.9 years ago Manuela Di Russo ▴ 70
0
votes
1
reply
1.1k
views
RangedData Element Metadata
Coverage rtracklayer ASSIGN Coverage rtracklayer ASSIGN
updated 12.9 years ago by ★ 11k • written 12.9 years ago by ★ 1.6k
0
votes
2
replies
1.1k
views
Creating a customized cut flow with the affy/limma packages
GO limma ASSIGN GO limma ASSIGN
updated 13.0 years ago by 68k • written 13.0 years ago by ▴ 20
0
votes
1
reply
1.1k
views
Creating a customized cut flow with the affy/limma packages
GO hgu133plus2 limma ASSIGN GO hgu133plus2 limma ASSIGN
updated 13.1 years ago by 68k • written 13.1 years ago by ★ 13k
0
votes
2
replies
1.4k
views
DEseq
ASSIGN ASSIGN
updated 13.1 years ago by ★ 6.0k • written 13.1 years ago by ▴ 30
0
votes
4
replies
1.8k
views
problem in reading bam files with EDASeq
Rsamtools EDASeq ASSIGN Rsamtools EDASeq ASSIGN
updated 13.1 years ago by ▴ 980 • written 13.1 years ago by ▴ 500
0
votes
2
replies
1.4k
views
htSeqTools - naming RangedData objects?
htSeqTools ASSIGN htSeqTools ASSIGN
updated 13.1 years ago by ★ 11k • written 13.1 years ago by ▴ 70
0
votes
0
replies
1.6k
views
limma - 2-color agilent microarray, GO annotation
Microarray Annotation GO Organism limma GOstats oligo ASSIGN Microarray Annotation GO
13.2 years ago Gordon Smyth 52k
0
votes
1
reply
1.2k
views
goSeq error
Cancer PROcess edgeR goseq ASSIGN Cancer PROcess edgeR goseq ASSIGN
13.3 years ago Matthew Young ▴ 50
0
votes
0
replies
1.6k
views
illuminaHumanv4 mappings
Infrastructure Cancer Homo sapiens probe AnnotationDbi ASSIGN Infrastructure Cancer probe
13.4 years ago Mark Cowley ▴ 910
0
votes
0
replies
984
views
"timecourse" package, problem with ordering of samples.
ASSIGN ASSIGN
13.4 years ago dha 2001 ▴ 30
0
votes
0
replies
1.4k
views
doubt in HTqPCR
Cancer ddCt cycle HTqPCR ASSIGN Cancer ddCt cycle HTqPCR ASSIGN
13.5 years ago Heidi Dvinge ★ 2.0k
0
votes
2
replies
1.8k
views
plotting probes along a chromosome
graph GenomeGraphs ASSIGN graph GenomeGraphs ASSIGN
updated 13.6 years ago by ▴ 550 • written 13.6 years ago by ▴ 240
0
votes
1
reply
4.5k
views
simpleafy plots
ASSIGN ASSIGN
updated 13.9 years ago by 68k • written 13.9 years ago by ★ 1.5k
0
votes
1
reply
1.1k
views
Using Sample IDs from Sample Name column
ASSIGN ASSIGN
updated 13.9 years ago by ★ 2.0k • written 13.9 years ago by ▴ 10
0
votes
3
replies
1.4k
views
working with two factors in DESeq to analyze RNA-seq
DESeq ASSIGN DESeq ASSIGN
updated 14.1 years ago by 52k • written 14.1 years ago by ▴ 150
0
votes
1
reply
1.2k
views
question about get a summary gene expression information from the probe set associated with one specific gene
Annotation GO cdf probe affy convert ASSIGN Annotation GO cdf probe affy convert
updated 14.2 years ago by ▴ 90 • written 14.2 years ago by 68k
0
votes
0
replies
1.0k
views
question about get a summary gene expression information from the probe set associated with one specific gene
Annotation probe convert ASSIGN Annotation probe convert ASSIGN
14.2 years ago Xiaowei Guan ▴ 90
0
votes
9
replies
3.2k
views
Conversion of affymetrix cell file to raw text file
Microarray probe ASSIGN Microarray probe ASSIGN
14.2 years ago viritha kaza ▴ 580
0
votes
3
replies
1.6k
views
Question about clustering and cluster validation
ASSIGN ASSIGN
updated 14.3 years ago by ▴ 20 • written 14.3 years ago by ▴ 370
0
votes
8
replies
3.2k
views
biomaRt - batch query for chromosome location to gene identifier?
biomaRt ASSIGN biomaRt ASSIGN
updated 14.3 years ago by 6.7k • written 14.3 years ago by ▴ 120
0
votes
1
reply
1.4k
views
Bootstrapping paired samples and tiny groups
ASSIGN ASSIGN
updated 14.5 years ago by ★ 6.0k • written 14.5 years ago by ▴ 830
0
votes
2
replies
1.4k
views
error/problem with biomaRt gene symbol query
Microarray Cancer probe biomaRt ASSIGN Microarray Cancer probe biomaRt ASSIGN
updated 14.7 years ago by ▴ 500 • written 14.7 years ago by ▴ 100
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Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k
No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…
Answer: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k
I strongly recommend to not concern yourself with these sorts of marginal problems because you're entering a realm in which you're entirely…
Comment: Problem using locateVariants() from the VariantAnnotation package by Marco • 0
Ok, I think I found the problem. By looking at the `locateVariants()` source code, I was able to pinpoint that the problems is when trying …
Comment: Conumee for EPIC and EPICv2 copy number by Adam • 0
As described on the [github](https://github.com/hovestadtlab/conumee2) the way to do this is using array_type = c("EPIC", "EPICv2") This i…
Comment: graper 1.22 Build is Broken by shepherl 4.1k
This is not an appropriate place to report this. this is for usage questions. maintainers are notified automatically when it is failing on …
Votes
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
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