Bioconductor Ashr

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DESeq2 apeglm DESeq ApeGLM Ashr

updated 21 months ago by Michael Love 43k • written 21 months ago by Ndimensional ▴ 20

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Ashr LFCShrinkage IHW DESeq2

3.3 years ago • updated 3.2 years ago Bex • 0

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ashr DESeq2 apeglm

updated 3.6 years ago by Michael Love 43k • written 3.7 years ago by Guandong Shang ▴ 40

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ashr DESeq2 lfcShrink svalue

4.1 years ago Enrico • 0

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deseq2 ashr

4.5 years ago da.de ▴ 30

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deseq2 ashr rna-seq

4.9 years ago Alex • 0

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ashr

4.9 years ago kavator ▴ 30

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ashr Deseq2 lfcThreshold

updated 3.5 years ago by Michael Love 43k • written 5.0 years ago by Iryna • 0

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Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

Thanks for your time on this, I have also never seen anything quite like this before neither. The only confounding variable I received in t…

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by ATpoint ★ 4.8k

If it was global changes then (in my head) why is there two populations of peaks (that to me indicates some sort of confouder) and also, if…

Comment: fast apply on RleList by story.benjamin ▴ 20

Here's a test data.set if you need: library(GenomicRanges) library(rtracklayer) # gr test test.gr <- GRanges(seqnames…

Answer: BiocParallel_1.40.1.tar.gz not available by shepherl 4.1k

Please try again. We have updated the BiocParallel package and BiocManager should work as expected (pulling 1.40.2 as source). The Landin…

Comment: BiocParallel_1.40.1.tar.gz not available by Johan • 0

Your approach works, but it implies manually rejecting the update of BiocParallel at each use of `BiocManager::install()`, which is pretty …

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Modelling gene program dynamics across time with {lemur}

A: DESeq2 one group vs multiple groups comparison in presence of batch effect

Comment: BiocParallel_1.40.1.tar.gz not available

Limma outputs different results for same sample?

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Popular Question to story.benjamin ▴ 20