Bioconductor Ashr

Showing : ashr • reset

votes

replies

900

views

DESeq2 apeglm DESeq ApeGLM Ashr

updated 15 months ago by Michael Love 42k • written 16 months ago by Ndimensional ▴ 20

votes

replies

1.3k

views

Ashr LFCShrinkage IHW DESeq2

2.9 years ago • updated 2.8 years ago Bex • 0

vote

replies

1.7k

views

ashr DESeq2 apeglm

updated 3.2 years ago by Michael Love 42k • written 3.2 years ago by Guandong Shang ▴ 40

votes

replies

1.1k

views

ashr DESeq2 lfcShrink svalue

3.7 years ago Enrico • 0

votes

1.1k

views

deseq2 ashr

4.1 years ago da.de ▴ 30

votes

replies

1.8k

views

deseq2 ashr rna-seq

4.5 years ago Alex • 0

votes

replies

757

views

ashr

4.5 years ago kavator ▴ 30

votes

replies

2.4k

views

ashr Deseq2 lfcThreshold

updated 3.1 years ago by Michael Love 42k • written 4.5 years ago by Iryna • 0

8 results • Page 1 of 1

Recent ...

Replies

Comment: How many of my genes from my gene list are in each KEGG pathway? by josephasmith1310 • 0

> You can compare the number in the column setSize versus the number of > genes in core_enrichment. The former corresponds to the number of…

Comment: EuroBioC2024 abstract submission is open! by Esperan • 0

Great information about the EuroBioC2024 conference! https://openreview.net/group?id=bioconductor.org/EuroBioC/2024/Conferences [slope](htt…

Answer: Combining RNAseq and microarray data using edgeR/limma-voom by Gordon Smyth 51k

I agree with James, although I tend to combine analyses using geneset tests rather than by meta analysis tools like GeneMeta. > My questio…

Comment: Adjusted p-values become NA when sub-setting samples by txema.heredia • 0

Thanks! I've been looking into DESeq2's code and, indeed, I get matching results when running manually the code inherited from the `genefi…

Answer: DESeq2 interaction between cancer cells and microenvironment cells by Michael Love 42k

I don't really know what you mean by "come from the contamination". You can look at the main effects and the interaction, but I don't know …

Votes

Answer: How do I merge a list of GRanges?

A: p.adjust BH generates duplicate values

Answer: Adjusted p-values become NA when sub-setting samples

Comment: Suggestion for FGSEA and GSEA creation for C57BL/6J Mice

Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim

Awards • All

Supporter to Paul Harrison ▴ 100

Popular Question to Mikhail Dozmorov ▴ 30