Showing : ashr • reset
0
votes
4
replies
920
views
lfc direction of effect flipped for ashr, apeGLM, but accurate to biological data for non-shrunken
DESeq2 apeglm DESeq ApeGLM Ashr
updated 16 months ago by 42k • written 16 months ago by ▴ 20
3
votes
2
replies
1.3k
views
Ashr and IHW
Ashr LFCShrinkage IHW DESeq2
2.9 years ago Bex • 0
1
vote
5
replies
1.7k
views
lfcShrink probelm in many 0 count genes RNA-seq data
ashr DESeq2 apeglm
updated 3.2 years ago by 42k • written 3.3 years ago by ▴ 40
2
votes
2
replies
1.1k
views
Negative svalues from DESeq2 lfcShrink with ashr
ashr DESeq2 lfcShrink svalue
3.7 years ago Enrico • 0
2
votes
1
reply
1.1k
views
padj NA after shrinking log2FC (DESeq2)
deseq2 ashr
4.1 years ago da.de ▴ 30
3
votes
4
replies
1.8k
views
Massive L2FC in DESeq2
deseq2 ashr rna-seq
4.6 years ago Alex • 0
0
votes
2
replies
766
views
Ashr error: Optimization failed to converge. Results may be unreliable. Try increasing maxiter and rerunning.
ashr
4.6 years ago kavator ▴ 30
0
votes
5
replies
2.4k
views
Deseq2, lfcThreshold .
ashr Deseq2 lfcThreshold
updated 3.1 years ago by 42k • written 4.6 years ago by • 0
8 results • Page 1 of 1
Recent ...
Replies
Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di by James W. MacDonald 67k
The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…
Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k
Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…
Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0
Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k
You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…
Answer: HilBertVis install error by James W. MacDonald 67k
It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…
Votes
A: TopGO: How to retrieve the gene list related to a GO ID ?
A: Error in DESeqDataSet : some values in assay are not integers
A: correcting the batch effects in Limma and SVA
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
Awards • All
Popular Question to Talip ▴ 10
Popular Question to alexandre.blais ▴ 50
Popular Question to Fred Hutch (Recruiting) ▴ 40
Scholar to Gordon Smyth 51k
Popular Question to chase.mateusiak • 0
Locations • All
Germany, 3 minutes ago
United States, 17 minutes ago
Australia, 30 minutes ago
Denmark, 58 minutes ago
WEHI, Melbourne, Australia, 58 minutes ago
Traffic: 620 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6