Bioconductor Arrays

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632

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illuminaHumanv3.db arrays

20 months ago DH • 0

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882

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limma arrays genefilter

updated 2.6 years ago by James W. MacDonald 67k • written 2.6 years ago by jacorvar ▴ 40

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2.1k

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Microarray arrays limma MicroarrayData

updated 3.6 years ago by Gordon Smyth 52k • written 3.7 years ago by Emma • 0

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1.8k

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limma Microarray MicroarrayData arrays

updated 3.7 years ago by Kevin Blighe ★ 4.0k • written 3.7 years ago by Emma • 0

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1.3k

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ArrayExpress limma arrays

3.7 years ago RMP87 • 0

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2.3k

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minfiDataEPIC arrays limma minfi Epigenetics

updated 4.2 years ago by Gordon Smyth 52k • written 4.2 years ago by Jeff ▴ 20

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3.4k

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array R rhdf5 arrays h5

updated 10.0 years ago by Nathaniel Hayden ▴ 180 • written 10.0 years ago by FabioF • 0

7 results • Page 1 of 1

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Answer: Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes by a.alkema • 0

Oh, that's silly - thanks, will do!

Answer: Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes by James W. MacDonald 67k

This support site is meant to provide support for Bioconductor packages, but `Meffil` is not part of Bioconductor. You could presumably con…

Comment: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k

> It looks like the ssgseaParam function might not be passing the > correct parameters to GSVA::gsva() Apparently because of the extra com…

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu by franknappi14 • 0

I tried it and it's working properly.

Answer: accounting for vs. removing batch effects with DESeq2 in RNAseq analysis by ATpoint ★ 4.6k

The vignette covers batch effects as per the authors best practice, please read it and consider following it.

Votes

Comment: Unused arguments error without used arguments in GSVA?

Answer: Reducing and aggregating GRanges with gaps using plyranges

Answer: Find exact GRanges match keeping metadata columns

Answer: Unused arguments error without used arguments in GSVA?

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Popular Question to Malcolm Cook ★ 1.6k