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4
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Archives prior to 3.15 gone
archive bioconductor
updated 14 months ago by 4.1k • written 2.3 years ago by ▴ 30
5
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5
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Archive location for Bioconductor packages
archive
updated 16 months ago by 4.1k • written 2.3 years ago by ▴ 20
5
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Where to find old limma packages not part of a Bioc release?
archive limma
2.8 years ago Jonathan • 0
5
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News: Bioconductor Package Archives
bioconductor archive news News
7.1 years ago Valerie Obenchain ★ 6.8k
1
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Package archive for the purpose of reproducible research
archive reproducibility
updated 9.0 years ago by 25k • written 9.0 years ago by ▴ 10
0
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3
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Locating older version of Bioconductor packages
reproducibility archive source code
updated 9.2 years ago by ★ 8.2k • written 9.2 years ago by • 0
0
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biomaRt: SNP no access to grch37.ensembl.org
SNP biomart archive grch37
9.8 years ago mrprao • 0
7 results • Page 1 of 1
Recent ...
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Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0
Thanks for your reply!
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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