Showing : annotatr • reset
0
votes
1
reply
189
views
Unknown gene transcripts after annotatr
annotatr
updated 3 months ago by 68k • written 3 months ago by • 0
0
votes
0
replies
531
views
Annotatr Duplicate Entries
annotatr AnnotationHub
15 months ago hayleyw • 0
0
votes
0
replies
460
views
annotatr rn7?
annotatr
15 months ago chuanjiao6 • 0
0
votes
1
reply
1.6k
views
sampling random regions of same nucleotide composition from hg38 genome
annotatr regioneR gkmSVM
updated 17 months ago by • 0 • written 4.3 years ago by ▴ 20
0
votes
1
reply
808
views
custom annotations with annotatr
annotatr
24 months ago luca.s ▴ 50
0
votes
1
reply
1.2k
views
Problem with annotations using annotatr
annotatr
2.7 years ago eric.rhoncalderon • 0
0
votes
0
replies
950
views
Is it possible to output ensembl id for annotatr build_annotations basicgenes?
Annotation annotatr
3.4 years ago Ahdee ▴ 60
0
votes
0
replies
1.1k
views
annotatr with custom TxDb
GenomicFeatures annotatr genomicFe
4.0 years ago António Miguel de Jesus Domingues ▴ 510
0
votes
0
replies
1.1k
views
annotatr package: GRanges object contains out-of-bound ranges
annotatr GenomicRanges
4.5 years ago Nala • 0
3
votes
4
replies
2.0k
views
Can't install packages on R or via Bioconductor
R installation packages annotatr biocmanager
5.1 years ago dakarai_esgdaille ▴ 10
1
vote
1
reply
1.8k
views
annotatr: CpG Island/Shore/Shelf IDs
annotatr
updated 6.4 years ago by ▴ 140 • written 6.4 years ago by • 0
0
votes
3
replies
1.8k
views
CpG site not annotated with annotatr
annotatr cpg
updated 6.5 years ago by ▴ 140 • written 6.5 years ago by • 0
0
votes
3
replies
1.4k
views
find intersections of genomic regions with built-in genomic annotations for S.Cerevisiae
annotatr
8.2 years ago vivianengoune • 0
0
votes
2
replies
2.0k
views
annotatr GRanges Error
annotatr
updated 8.2 years ago by ▴ 140 • written 8.2 years ago by • 0
4
votes
2
replies
1.4k
views
Annotatr package not loading certain features
annotatr
updated 8.4 years ago by ★ 6.8k • written 8.4 years ago by • 0
15 results • Page 1 of 1
Recent ...
Replies
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…
Answer: RNA-seq input to GRaNIE by James W. MacDonald 68k
This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…
Answer: Help using reduceSimMatrix with a custom annotation by sergisayolspuig ▴ 80
Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…
Answer: Analyzing TnSeq data with DESeq2 by cold.wolverine.arku • 0
That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…
Comment: RNA Seq using Lrt by Rob • 0
So if I have understood what you have said : If i want to see if Day (time) has an effect / is being tested - then the reduced model should…
Votes
A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
Answer: ROAST for small sets
Answer: ROAST for small sets
A: conceptual question about FDR, FDR adjusted p-value and q-value
Awards • All
Popular Question to Kinnary ▴ 20
Popular Question to sergisayolspuig ▴ 80
Popular Question to richardallenfriedmanbrooklyn ▴ 30
Scholar to Gordon Smyth 52k
Popular Question to shepherl 4.1k
Locations • All
United States, 6 minutes ago
EMBL Heidelberg, 6 minutes ago
UPF, Barcelona, Spain, 11 minutes ago
France, 13 minutes ago
United States, 23 minutes ago
Traffic: 1281 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6