Showing : annotatr • reset
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Unknown gene transcripts after annotatr
annotatr
updated 15 days ago by 67k • written 15 days ago by • 0
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464
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Annotatr Duplicate Entries
annotatr AnnotationHub
12 months ago hayleyw • 0
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407
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annotatr rn7?
annotatr
12 months ago chuanjiao6 • 0
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1.4k
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sampling random regions of same nucleotide composition from hg38 genome
annotatr regioneR gkmSVM
updated 14 months ago by • 0 • written 4.1 years ago by ▴ 20
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758
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custom annotations with annotatr
annotatr
21 months ago luca.s ▴ 50
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1.1k
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Problem with annotations using annotatr
annotatr
2.5 years ago eric.rhoncalderon • 0
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897
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Is it possible to output ensembl id for annotatr build_annotations basicgenes?
Annotation annotatr
3.1 years ago Ahdee ▴ 50
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1.0k
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annotatr with custom TxDb
GenomicFeatures annotatr genomicFe
3.8 years ago António Miguel de Jesus Domingues ▴ 510
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1.1k
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annotatr package: GRanges object contains out-of-bound ranges
annotatr GenomicRanges
4.3 years ago Nala • 0
3
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4
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1.9k
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Can't install packages on R or via Bioconductor
R installation packages annotatr biocmanager
4.8 years ago dakarai_esgdaille ▴ 10
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1.7k
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annotatr: CpG Island/Shore/Shelf IDs
annotatr
updated 6.2 years ago by ▴ 140 • written 6.2 years ago by • 0
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3
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1.7k
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CpG site not annotated with annotatr
annotatr cpg
updated 6.3 years ago by ▴ 140 • written 6.3 years ago by • 0
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3
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1.3k
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find intersections of genomic regions with built-in genomic annotations for S.Cerevisiae
annotatr
8.0 years ago vivianengoune • 0
0
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2
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1.9k
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annotatr GRanges Error
annotatr
updated 8.0 years ago by ▴ 140 • written 8.0 years ago by • 0
4
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2
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1.3k
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Annotatr package not loading certain features
annotatr
updated 8.2 years ago by ★ 6.8k • written 8.2 years ago by • 0
15 results • Page 1 of 1
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Comment: build samplesheet and plot profile by yf • 0
![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a
Answer: I am having issues with bowtie2_build by James W. MacDonald 67k
Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…
Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k
Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…
Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k
FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…
Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10
I see. Thank you ATpoint!
Votes
A: Doubt about the "zero expression" genes or genes with no reads at all in the co
Answer: Unable to install nloptr
Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?
C: How does edgeR cpm function calculate log(CPM) values?
Answer: Selection of correct coefficients or contrasts in DESeq2
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