Showing : annaffy • reset
3
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1
reply
1.3k
views
Gene Ontology link in aaf.handler() not working
annaffy aafTableAnn Gene Ontology aaf.handler()
updated 5.9 years ago by 68k • written 5.9 years ago by • 0
1
vote
10
replies
3.2k
views
Error installing Annaffy
affy annaffy go.db kegg.db
updated 7.9 years ago by 68k • written 7.9 years ago by • 0
0
votes
5
replies
2.9k
views
Issues about how to filter and annotate the MoGene-2_0-st and MoEx-1_0-st-v1 array probe sets
Annotation probe annotate annaffy oligo ReportingTools Annotation probe annotate annaffy
updated 10.7 years ago by ▴ 160 • written 10.8 years ago by 68k
0
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1
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1.7k
views
limma2annaffy
GO GUI annaffy oligo oligoClasses KEGGREST GO GUI annaffy oligo oligoClasses KEGGREST
updated 11.2 years ago by 68k • written 11.2 years ago by ★ 13k
0
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2
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1.4k
views
Possible problem with Rhesus array annotation package
Annotation GO annotate annaffy Annotation GO annotate annaffy
updated 13.6 years ago by ★ 7.2k • written 13.6 years ago by ▴ 30
0
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1
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1.9k
views
Help with GSEA package
hu6800 cdf genefilter multtest affy gcrma siggenes annaffy GSEABase hu6800 cdf multtest
updated 14.3 years ago by 25k • written 14.3 years ago by ▴ 20
0
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2
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1.2k
views
list of annaffy .db files?
Annotation annotate annaffy Annotation annotate annaffy
updated 14.5 years ago by 6.7k • written 14.5 years ago by ▴ 80
0
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1
reply
1.1k
views
help with multtest and annaffy
annaffy annaffy
updated 14.8 years ago by 68k • written 14.8 years ago by ▴ 90
0
votes
2
replies
1.4k
views
help with illumina microarray (DASL)
Microarray Annotation annaffy lumi Microarray Annotation annaffy lumi
updated 14.8 years ago by ★ 1.2k • written 14.8 years ago by ▴ 90
0
votes
3
replies
1.7k
views
help with annaffy package
GO annaffy GO annaffy
14.8 years ago Taylor, Katie ▴ 90
0
votes
1
reply
1.4k
views
annaffy-like HTML autput for org.Hs.eg.db and similar metadata packages
Microarray Annotation GO annaffy Microarray Annotation GO annaffy
updated 14.9 years ago by 6.7k • written 14.9 years ago by ▴ 40
0
votes
3
replies
1.4k
views
annotation of affymetrix microarray data
annotate annaffy annotate annaffy
updated 14.9 years ago by 21k • written 14.9 years ago by ▴ 90
0
votes
1
reply
1.1k
views
Multiple genes per probeset
Annotation Cancer mouse4302 annaffy ASSIGN Annotation Cancer mouse4302 annaffy ASSIGN
updated 14.9 years ago by 68k • written 14.9 years ago by ★ 2.0k
0
votes
2
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1.5k
views
probe to entrezID mapping with aafLocusLink
GO hgu133plus2 probe annaffy convert GO hgu133plus2 probe annaffy convert
updated 15.3 years ago by 68k • written 15.3 years ago by ▴ 10
0
votes
7
replies
2.1k
views
Missing GeneSymbol and Name information in TopTable
Annotation hgu133plus2 annaffy affylmGUI Annotation hgu133plus2 annaffy affylmGUI
updated 15.6 years ago by ★ 7.2k • written 15.6 years ago by ▴ 40
0
votes
0
replies
1.2k
views
Annotation.db: how automatically call a mapping?
Annotation GO moe430a affy limma annaffy affycoretools Annotation GO moe430a affy limma
15.7 years ago James W. MacDonald 68k
0
votes
1
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1.1k
views
problem with the structure of a list of pathways
Genetics Pathways probe annaffy Genetics Pathways probe annaffy
updated 15.7 years ago by 68k • written 15.7 years ago by ▴ 60
0
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0
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862
views
problem with annaffy package
annaffy annaffy
15.7 years ago Alberto Goldoni ▴ 420
0
votes
0
replies
1.1k
views
problem using annotation database with annaffy
Annotation GO zebrafish annaffy Annotation GO zebrafish annaffy
15.8 years ago Georg Otto ▴ 510
0
votes
5
replies
1.5k
views
annotation information about ecoli2
Annotation GO probe annaffy Annotation GO probe annaffy
updated 16.4 years ago by 68k • written 16.4 years ago by ▴ 10
0
votes
2
replies
4.3k
views
Human Gene 1.0 ST array
Annotation probe annaffy Annotation probe annaffy
updated 16.4 years ago by 68k • written 16.4 years ago by ▴ 10
0
votes
5
replies
5.6k
views
Affymetrix probeset ids to gene symbols
annaffy annaffy
updated 16.7 years ago by ▴ 160 • written 16.7 years ago by ▴ 300
0
votes
0
replies
1.3k
views
affycoretools vennSelect problem
Annotation GO Survival probe annotate genefilter affy graph limma gcrma annaffy RBGL
16.7 years ago Nick Henriquez ▴ 20
0
votes
2
replies
1.4k
views
affycoretools vennSelect problem
GO Survival annotate genefilter affy graph gcrma annaffy RBGL GOstats biomaRt affyio
updated 16.7 years ago by 68k • written 16.7 years ago by ▴ 30
0
votes
12
replies
2.4k
views
Building BioC 2.2 with R 2.7.0
GO annaffy simpleaffy GO annaffy simpleaffy
updated 16.8 years ago by ▴ 630 • written 16.8 years ago by ▴ 160
0
votes
0
replies
959
views
annaffy w/yeast2
yeast2 annaffy yeast2 annaffy
16.9 years ago Sebastien Gerega ▴ 370
0
votes
0
replies
1.4k
views
BioConductor Developer Workshop Lausanne 2008 Info
SNP Annotation annaffy AnnBuilder biomaRt cellHTS2 SNP Annotation annaffy AnnBuilder
17.1 years ago Darlene Goldstein ▴ 230
0
votes
2
replies
1.4k
views
getURL in annaffy fails when object length==1 (or how to cope with collapsed lists, arrays, etc?)
annaffy annaffy
updated 17.1 years ago by ▴ 540 • written 17.1 years ago by ▴ 30
0
votes
0
replies
1.2k
views
MTP error
GO Survival multtest affy affydata annaffy affyPLM affyio GO Survival multtest affy
17.3 years ago Boel Brynedal ▴ 200
0
votes
1
reply
905
views
OMIM and annaffy
affy annaffy affy annaffy
updated 17.6 years ago by 68k • written 17.6 years ago by ▴ 510
0
votes
9
replies
2.2k
views
problem with duplicateCorrelation and ExpressionSet objects
GO Survival cdf Biobase graph limma gcrma annaffy affyPLM simpleaffy biomaRt Category
updated 17.8 years ago by ★ 7.4k • written 17.8 years ago by ★ 2.2k
0
votes
1
reply
880
views
error in annaffy
annaffy annaffy
updated 17.9 years ago by 68k • written 17.9 years ago by ▴ 510
0
votes
0
replies
1.3k
views
RBGL: bfs & dfs with directed graphs
GO Biobase annotate geneplotter graph Rgraphviz annaffy RBGL convert GO Biobase graph
17.9 years ago stephen edwards ▴ 10
0
votes
2
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1.9k
views
"AveExp" column has dissappeared from limma topTable
GO Survival annotate geneplotter affydata limma annaffy affyPLM GO Survival annotate
updated 17.9 years ago by 52k • written 18.0 years ago by ▴ 680
0
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1
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1.3k
views
topTable "resort.by" broken...
GO Survival Biobase annotate genefilter affy affydata graph gcrma matchprobes annaffy
updated 18.0 years ago by 52k • written 18.0 years ago by ★ 2.2k
0
votes
1
reply
1.5k
views
question about limma2annaffy
GO Survival Biobase annotate genefilter geneplotter affy affydata graph limma annaffy
updated 18.0 years ago by 68k • written 18.0 years ago by ★ 2.2k
0
votes
1
reply
1.2k
views
amigo links: gene ontology annotation for probes
Annotation GO Biobase annotate annaffy Annotation GO Biobase annotate annaffy
updated 18.1 years ago by ▴ 10 • written 18.1 years ago by ▴ 220
0
votes
1
reply
1.4k
views
annaffy errors
GO Survival mgu74av2 cdf annotate affy limma gcrma matchprobes annaffy simpleaffy plier
updated 18.1 years ago by 68k • written 18.1 years ago by ▴ 320
0
votes
1
reply
1.3k
views
Problems with BioConductor 1.9 in R-2.4.1
annaffy annaffy
updated 18.2 years ago by ★ 7.4k • written 18.2 years ago by ▴ 630
0
votes
2
replies
1.2k
views
2fold sigchanges from limma
GO Survival hgu133a2 annotate hexbin limma gcrma matchprobes annaffy GO Survival hexbin
updated 18.3 years ago by 52k • written 18.3 years ago by ▴ 60
0
votes
1
reply
1.1k
views
Annaffy problem loading metadata
mouse4302 annaffy mouse4302 annaffy
18.8 years ago Bornman, Daniel M ▴ 110
0
votes
2
replies
1.4k
views
AnnBuilder problem for mu11ksuba
Organism mu11ksuba annotate limma gcrma matchprobes annaffy AnnBuilder Organism mu11ksuba
updated 19.0 years ago by ▴ 780 • written 19.0 years ago by ★ 1.4k
0
votes
4
replies
1.7k
views
coerce aafTable object into dataframe (annaffy)
annaffy annaffy
19.1 years ago • updated 19.0 years ago Georg Otto ▴ 510
0
votes
1
reply
1.1k
views
rbind in annaffy problem
GO hgu95av2 rat2302 cdf annotate affy graph annaffy RBGL GOstats biomaRt GO hgu95av2
updated 19.3 years ago by 68k • written 19.3 years ago by ▴ 890
0
votes
2
replies
1.3k
views
problem with annaffy aafFunction function
GO hgu95av2 rat2302 Biobase annotate reposTools affy annaffy GO hgu95av2 rat2302 affy
updated 19.4 years ago by 68k • written 19.4 years ago by ▴ 890
0
votes
4
replies
1.2k
views
GO package
annaffy annaffy
updated 19.4 years ago by ★ 7.4k • written 19.4 years ago by ▴ 490
0
votes
6
replies
1.8k
views
Many missing GO terms from GOHyperG call using mgu74av2
GO Survival hgu95av2 mgu74av2 Ruuid annotate multtest affy graph annaffy RBGL GOstats
updated 19.7 years ago by ★ 7.4k • written 19.7 years ago by ★ 1.4k
0
votes
3
replies
1.3k
views
misnamed annotation environments with annaffy
Annotation annaffy Annotation annaffy
updated 19.8 years ago by ★ 7.4k • written 19.8 years ago by ▴ 320
0
votes
1
reply
1.2k
views
annotation problem with hgu133plus2
Annotation GO hgu133plus2 cdf annotate affy siggenes annaffy Annotation GO hgu133plus2
19.8 years ago Yanqin Yang ▴ 250
0
votes
0
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974
views
annotation problem with hgu133plus2
GO cdf annotate reposTools affy siggenes annaffy GO cdf annotate reposTools affy
19.8 years ago Seth Falcon ★ 7.4k
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Comment: www.stats.ox.ac.uk seems to be off, leading to errors/delays when installing pac by DENG • 0
[https://github.com/djunsheep/CRANextra/blob/main/README.md][1] add the following to the `.Rprofile` and `Rprofile.site` # fixing the…
Comment: Transcript ID Mismatch in riboWaltz Annotation Table by shepherl 4.1k
riboWalze is not a Bioconductor package and does not appear to be a Bioconductor function; the maintainer is not guaranteed to be on this …
Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf by shepherl 4.1k
What is your `sessionInfo()`? I just tried locally and it works fine so there might have been a bad or interrupted download when initially…
Comment: error in ChAMP loading file by shocked.tick.zyet • 0
Great troubleshooting steps for ChAMP import issues! "ChAMP methylation data import errors" on [Google Search][1] for similar cases. Header…
Comment: orgDB by jenniferping36 • 0
Thanks for the suggestion! I'll check out the resources.
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