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Michael Love
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written 5.2 years ago by
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Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di
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The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…
Comment: Identical samples after deseq2 batch effect removal
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Michael Love
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Oh, i didn't realize there is another method in the mix here.
I would not necessarily trust this "batch correction" method, and suspect o…
Comment: Identifying potentially associated gene set to drug response using GSVA
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Kent
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Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
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You can easily answer this question yourself.
```
> library(BiocPkgTools)
Loading required package: htmlwidgets
> depdf <- buildPkgDe…
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It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…
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