Bioconductor Airway

Showing : airway • reset

vote

replies

3.2k

views

airway

updated 3.2 years ago by ATpoint ★ 4.8k • written 3.2 years ago by j.jacob1 • 0

votes

882

views

RNASeq DESeq2 airway

updated 3.3 years ago by Michael Love 43k • written 3.3 years ago by dmbergau • 0

votes

replies

1.4k

views

airway

5.0 years ago brest • 0

votes

replies

1.6k

views

RNAseqdataset airway deseq2 rangedsummarizedexperiment rnaseqgene

updated 7.1 years ago by mario.zanfardino ▴ 160 • written 7.1 years ago by ap3637 • 0

vote

replies

4.1k

views

airway

updated 8.2 years ago by Martin Morgan 25k • written 8.2 years ago by liyi983923 • 0

vote

replies

5.9k

views

airway

updated 9.4 years ago by Dan Tenenbaum ★ 8.2k • written 9.4 years ago by jmmonroykuhn • 0

votes

1.3k

views

deseq2 airway

updated 9.6 years ago by Michael Love 43k • written 9.6 years ago by pcantalupo ▴ 10

7 results • Page 1 of 1

Recent ...

Replies

Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

Votes

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

Awards • All