Showing : agimicrorna • reset
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Unable to use the function named read.agiMicroRna()
AgiMicroRna
updated 5.1 years ago by 67k • written 5.1 years ago by ▴ 10
1
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2
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1.2k
views
covert from RGList to uRNAList
agilent agimicrorna
updated 6.1 years ago by 52k • written 6.1 years ago by ▴ 30
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2
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1.5k
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problems in reading a file in AgiMicroRna package
agimicrorna read.agimicrorna agilent microarrays
updated 7.2 years ago by ★ 1.0k • written 7.2 years ago by • 0
1
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2
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1.3k
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Package: AgiMicroRna; Error in Loading the file
AgiMicroRna
7.3 years ago • updated 7.2 years ago neelakandanbt • 0
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AgiMicroRna_Error in xy.coords(x, y) : 'x' and 'y' lengths differ(tgsNormalization)
AgimicroRNA
8.3 years ago cpsingh9 • 0
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Inappropriate Statistical Models for Agilent microRNA Microarray Data
agimicrorna linear model
8.8 years ago Dario Strbenac ★ 1.5k
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AgiMicroRna for new Agilent Chip format
Microarray GO limma PROcess microRNA AgiMicroRna Microarray GO limma PROcess microRNA
11.9 years ago Gordon Smyth 52k
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AgiMicroRna for new Agilent Chip format - columns gTotalGeneSignal and gTotalProbeSignal missing
GO AgiMicroRna GO AgiMicroRna
updated 11.9 years ago by ★ 1.0k • written 11.9 years ago by ★ 13k
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Agilent Chip G4858A-039494: columns gTotalGeneSignal, gTotalProbeSignal missing for AgiMicroRna
GO AgiMicroRna GO AgiMicroRna
11.9 years ago Guest User ★ 13k
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segmentation fault in rma.background.correct()
GO Preprocessing AgiMicroRna GO Preprocessing AgiMicroRna
12.4 years ago Axel Klenk ★ 1.0k
0
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4
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2.0k
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Should AgiMicroRna and GeneSpring quantile normalisation be the same ?
Normalization GeneSpring microRNA AgiMicroRna Normalization GeneSpring microRNA AgiMicroRna
updated 12.4 years ago by ★ 1.3k • written 12.4 years ago by ▴ 30
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3
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3.0k
views
Access to Source Codes of Packges
limma AgiMicroRna limma AgiMicroRna
updated 12.6 years ago by 21k • written 12.6 years ago by ▴ 200
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6
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1.5k
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AgiMicroRna and Replicates
AgiMicroRna AgiMicroRna
updated 12.6 years ago by ★ 13k • written 12.6 years ago by ▴ 200
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Issues with AgiMicroRna filtering step (Error in is(ddNORM, "uRNAList") : object 'ddNORM' not found)
probe AgiMicroRna probe AgiMicroRna
12.9 years ago Karthik K N ▴ 200
0
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6
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1.8k
views
Important: Help with eBayes in AgiMicrRna and on how to find differentially expressed genes
bgx AgiMicroRna bgx AgiMicroRna
updated 12.9 years ago by ▴ 60 • written 12.9 years ago by ▴ 200
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907
views
Installing AgiMicroRna Package
AgiMicroRna AgiMicroRna
updated 12.9 years ago by 25k • written 12.9 years ago by ▴ 200
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935
views
filterMicroRna function of AgiMicroRna for filtering by sample replicates
probe microRNA AgiMicroRna probe microRNA AgiMicroRna
13.4 years ago Viki S ▴ 20
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3
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1.7k
views
AgiMicroRna with single channel Agilent Array
AgiMicroRna AgiMicroRna
13.5 years ago John Lande ▴ 280
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1.1k
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Limma - batch issues
miRNA Microarray limma PROcess AgiMicroRna miRNA Microarray limma PROcess AgiMicroRna
13.5 years ago Segal, Corrinne ▴ 40
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ProbeNames are not matching miR names in RMA-normalized data with AgiMicroRna
miRNA Microarray Normalization AgiMicroRna miRNA Microarray Normalization AgiMicroRna
13.9 years ago Paola Ostano ▴ 10
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1.4k
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AgiMicroRna problem
Annotation microRNA AgiMicroRna Annotation microRNA AgiMicroRna
updated 13.9 years ago by ▴ 200 • written 13.9 years ago by ▴ 120
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4
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1.7k
views
Loading data into AgiMicroRna
AgiMicroRna AgiMicroRna
updated 14.2 years ago by ▴ 460 • written 14.2 years ago by ▴ 280
0
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3
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1.4k
views
AgiMicroRna problems
miRNA Normalization FeatureExtraction PROcess microRNA AgiMicroRna miRNA Normalization
updated 14.3 years ago by ▴ 230 • written 14.3 years ago by ▴ 910
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8
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2.1k
views
AgiMicroRna problems
Normalization PROcess microRNA AgiMicroRna Normalization PROcess microRNA AgiMicroRna
14.3 years ago Mark Cowley ▴ 910
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1.2k
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Agi4x44PreProcess
GUI zebrafish probe AgiMicroRna GUI zebrafish probe AgiMicroRna
14.3 years ago Neel Aluru ▴ 460
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1
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1.4k
views
AgiMicroRna and readMicroRnaFE
miRNA AgiMicroRna miRNA AgiMicroRna
updated 14.4 years ago by ★ 2.0k • written 14.4 years ago by ▴ 200
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4
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1.5k
views
Model variable optimisation
Regression probe limma AgiMicroRna Regression probe limma AgiMicroRna
updated 14.5 years ago by ▴ 330 • written 14.5 years ago by ▴ 60
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AgiMicroRna and ComBat
miRNA probe AgiMicroRna miRNA probe AgiMicroRna
14.5 years ago Segal, Corrinne ▴ 40
0
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1
reply
970
views
AgiMicroRna package error message
Normalization microRNA AgiMicroRna Normalization microRNA AgiMicroRna
14.6 years ago Wang, Yonghong NIH/NCI ▴ 60
0
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1
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1.2k
views
Error message with rmaMicroRna on mouse data in AgiMicroRNA
Cancer probe AgiMicroRna Cancer probe AgiMicroRna
updated 14.6 years ago by ▴ 360 • written 14.6 years ago by ★ 2.0k
0
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838
views
mvaPlots of RMA normalized data in AgiMicroRNA
Cancer AgiMicroRna Cancer AgiMicroRna
14.6 years ago Richard Friedman ★ 2.0k
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1.6k
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AgiMicroRna - FilterMicroRna and SignificantMicroRna function
miRNA zebrafish probe AgiMicroRna miRNA zebrafish probe AgiMicroRna
14.6 years ago Neel Aluru ▴ 460
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1
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1.2k
views
segfault with rmaMicroRna in AgiMicroRna package
PROcess AgiMicroRna PROcess AgiMicroRna
updated 14.7 years ago by ★ 7.4k • written 14.7 years ago by ▴ 360
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2
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1.5k
views
AgiMicroRna package is not available at bioconductor or not in active form???
Microarray Network microRNA AgiMicroRna Microarray Network microRNA AgiMicroRna
updated 14.8 years ago by ▴ 60 • written 14.8 years ago by 21k
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6
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2.0k
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Normalisation of Agilent microRNA arrays using inbuilt controls?
GO Cancer vsn AgiMicroRna GO Cancer vsn AgiMicroRna
updated 14.9 years ago by ★ 3.6k • written 14.9 years ago by ★ 1.9k
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1.3k
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Agilent Array Analysis Question
affy limma Agi4x44PreProcess AgiMicroRna affy limma Agi4x44PreProcess AgiMicroRna
updated 15.1 years ago by ★ 1.3k • written 15.1 years ago by ▴ 350
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Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Gordon Smyth 52k
It is not possible to use both. estimateGLMRobustDisp() estimates negative binomial dispersions for each gene, whereas glmQLFit() estimates…
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Thank you. What is the difference between setting robust=TRUE in glmQLFit and estimateGLMRobustDisp? The paper i mentioned in the post used…
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Your approach of using ~2500 single-copy orthologs and normalizing with VST or rlog for PCA is valid for exploring general clustering [pap…
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pheno <- rnb.set.arrays@pheno # Phenotypic data sites <- rnb.set.arrays@sites # CpG site definitions (data.frame) meth <- rnb.set…
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![enter image description here][1] [1]: /media/images/40d9778d-b044-4405-9b3d-2ba835f6 Hi, after I convert to RnBiseqSet, it shows "All…
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