Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
affymetrix
•
reset
1
vote
2
replies
1.0k
views
Problem with results of Differential expression in Affymetrix microarray
limma
MicroarrayData
Microarray
Affymetrix
2.6 years ago
Mikołaj Mierzejewski
• 0
1
vote
2
replies
1.4k
views
Affymetrix analysis of microarray by using Limma
limma
MicroarrayData
Microarray
Affymetrix
2.6 years ago
Mikołaj Mierzejewski
• 0
0
votes
2
replies
2.2k
views
How to convert .CEL file to .VCF file?
vcf
cell
affymetrix
3.6 years ago
jesus
• 0
0
votes
1
reply
1.1k
views
Microarray: Build annotation for HT MG430PM affymetrix
AffymetrixChip
Microarray
affymetrix
updated 3.8 years ago by
Guido Hooiveld
★ 4.1k • written 3.8 years ago by
Pierre-Alex
• 0
0
votes
1
reply
2.6k
views
How to plot the RMA log2 normalised data from Affymetrix
log2
RMA
Affymetrix
affy
Normalization
updated 3.9 years ago by
Kevin Blighe
★ 4.0k • written 3.9 years ago by
Lara
• 0
3
votes
4
replies
1.8k
views
AnnotationData package for Affymetrix HT MG-430 PM Array Plate
RNAseq
Affymetrix
Mouse
updated 4.3 years ago by
Guido Hooiveld
★ 4.1k • written 4.3 years ago by
olrema
• 0
5
votes
5
replies
1.5k
views
Annotation issue while analyzing processed Affymetrix Human Exon 1.0 ST Arrays from Geoquery
affycoretools
huex10sttranscriptcluster.db
affymetrix
Geoquery
updated 4.8 years ago by
James W. MacDonald
67k • written 4.8 years ago by
svlachavas
▴ 840
0
votes
3
replies
941
views
Input files for Affymetrix platform
Affymetrix
CEL
TXT
updated 5.1 years ago by
James W. MacDonald
67k • written 5.1 years ago by
pbachali
▴ 50
0
votes
1
reply
1.6k
views
Is GCRMA normalization possible with oligo?
oligo
pd.moe430a
gcrma
affymetrix
normalization
updated 5.2 years ago by
Rise
• 0 • written 6.0 years ago by
Guido Hooiveld
★ 4.1k
0
votes
7
replies
2.4k
views
Annotation of probes from Affymetrix and Illumina platforms in MACQ project ?
Affymetrix
Illumina
probes
microarray
annotation package
updated 5.7 years ago by
Guido Hooiveld
★ 4.1k • written 5.7 years ago by
naf
• 0
0
votes
1
reply
874
views
differential expression analysis of rice
microarray
differential expression analysis
GPL2025
affymetrix
updated 5.8 years ago by
Aaron Lun
★ 28k • written 5.8 years ago by
pratikshasharma47
• 0
3
votes
3
replies
1.3k
views
Limma: Don't have .CEL Affymatrix Files.
limma
affymetrix
updated 6.3 years ago by
Gordon Smyth
52k • written 6.3 years ago by
CantExitVIM
▴ 10
0
votes
1
reply
1.6k
views
Finding/Understanding Affy 6.0 Annotation File
affy
affymetrix
microarray
SNP
6.5 years ago
CantExitVIM
▴ 10
0
votes
1
reply
1.1k
views
Affy Mouse Annotation
annotation
affymetrix
updated 6.8 years ago by
James W. MacDonald
67k • written 6.8 years ago by
trhood
• 0
4
votes
5
replies
2.6k
views
Retrieving probes mapping to gene ID in microarray analysis
microarray
affymetrix
probeset
probe
updated 7.3 years ago by
Mike Smith
★ 6.6k • written 7.3 years ago by
n.lu
• 0
0
votes
2
replies
1.7k
views
Quality control for Affymetrix GeneChip Mouse Gene 2.0 ST Array
qc
qualitycontrol
arrayqualitymetrics
mouse gene st 2.0
affymetrix
updated 7.4 years ago by
James W. MacDonald
67k • written 7.4 years ago by
n.lu
• 0
6
votes
7
replies
3.6k
views
Appropriate pre-processing pipeline for Human Transcriptome Array HTA 2.0 with oligo for DE analysis
oligo
affycoretools
hta2.0
affymetrix
updated 2.7 years ago by
Yang Shi
▴ 10 • written 7.8 years ago by
svlachavas
▴ 840
1
vote
5
replies
2.1k
views
Filtering genes with missing Entrez ID using "nsFilter"
nsfilter
affymetrix
hugene10sttranscriptcluster.db annotation
updated 7.9 years ago by
James W. MacDonald
67k • written 7.9 years ago by
hallie.cla
• 0
0
votes
0
replies
1.2k
views
QC for Affymetrix Arrays
affymetrix
affymetrix microarrays
aroma
8.6 years ago
gaiusjaugustus
• 0
0
votes
3
replies
1.8k
views
frma: "mogene.2.0.stfrmavecs" availability?? - Gene Barcode 3.0
frma
affymetrix
barcode
updated 9.0 years ago by
Matthew McCall
▴ 830 • written 9.0 years ago by
minnie
• 0
3
votes
8
replies
2.7k
views
Error aroma.affymetrix [affxparser Fusion SDK exception]
affymetrix
affxparser
updated 9.1 years ago by
Henrik Bengtsson
★ 2.4k • written 9.1 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
1
reply
2.0k
views
PLIER normalization for Affymetrix GeneChip arrays?
microarray
affymetrix
oligo
RMA
normalization
updated 9.1 years ago by
James W. MacDonald
67k • written 9.1 years ago by
Nathaniel
▴ 20
3
votes
1
reply
1.8k
views
what is fitProbeLevelModel()? doing
affymetrix
oligo
microarray
updated 9.1 years ago by
James W. MacDonald
67k • written 9.1 years ago by
Nathaniel
▴ 20
5
votes
9
replies
4.5k
views
Looking for annotation file for Affymetrix SNP 6.0
copynumber
snp
affymetrix
9.2 years ago • updated 9.1 years ago
KB
▴ 50
0
votes
1
reply
1.4k
views
extract raw expression values in oligo package
oligo
affymetrix
raw expression
9.4 years ago
queso012
• 0
0
votes
0
replies
1.6k
views
News:
Rebuilding annotation packages for Affymetrix Gene/Exon ST Arrays
affymetrix
annotation
microarray
News
9.6 years ago
James W. MacDonald
67k
0
votes
1
reply
1.3k
views
Filtering out lowly expressed genes on Affymetrix Gene ST arrays
Affymetrix
Gene ST
limma
9.7 years ago
knaxerova
▴ 10
0
votes
0
replies
1.1k
views
Remove coexpressed gene pair modules using eisa package
isa2
eisa
microarray
affymetrix
9.7 years ago
dhwani.dholakia
• 0
2
votes
4
replies
2.4k
views
Analysis of Affymetrix Mouse Gene 2.0 ST arrays
affymetrix
limma
filtering
updated 9.7 years ago by
James W. MacDonald
67k • written 9.7 years ago by
ablanchetcohen
• 0
2
votes
6
replies
1.9k
views
Appropriate use of the function mroast to find KEGG pathways for differential expression
mroast
limma
pathway analysis
differential gene expression
affymetrix
9.8 years ago
svlachavas
▴ 840
0
votes
2
replies
1.8k
views
Possible Data integration of molecular data(transcriptomic) and imaging data from the same patients in R
data integration
microarray
bioconductor
affymetrix
biomarkers
updated 9.9 years ago by
Wolfgang Huber
★ 13k • written 9.9 years ago by
svlachavas
▴ 840
2
votes
2
replies
1.2k
views
Is it possible some statistical evaluation with a few replicates and one control in microarray data analysis in r
r
bioconductor
affymetrix
differential gene expression
updated 9.9 years ago by
James W. MacDonald
67k • written 9.9 years ago by
svlachavas
▴ 840
0
votes
0
replies
2.4k
views
MAplot: Binning grid too coarse for current (small) bandwidth
affy
affymetrix
affymetrics
affymetrixchip
10.0 years ago
neverstop
• 0
6
votes
5
replies
2.1k
views
Limma ebayes returns a list with Affy pd.hugene.2.0.st arrays
ebayes
expression
affymetrix
pd.hugene.2.0.st
limma
updated 10.0 years ago by
Gordon Smyth
52k • written 10.0 years ago by
Paulo Nuin
▴ 200
0
votes
1
reply
2.2k
views
RNA degradation plot: why curves are so smooth?
normalization
microarray
affymetrix
updated 10.0 years ago by
James W. MacDonald
67k • written 10.0 years ago by
neverstop
• 0
3
votes
15
replies
3.0k
views
Are the p-values supposed to be on the order of 10^-120?
limma
affy
bioconductor
affymetrix
updated 10.3 years ago by
Gordon Smyth
52k • written 10.3 years ago by
mccallionc403
• 0
36 results • Page
1 of 1
Recent ...
Replies
Answer: How to sort negative log2FC or FC in RNAseq for GSEA?
by
ATpoint
★ 4.6k
GSEA asks whether there are general shifts in gene expression towards certain terms. Hence, you would not split your results tables but ord…
Comment: EdgeR Biological CVs
by
James
• 0
Cheers. I presume question (1) would be answered by using a prior G0 of 0? For question (2), I was expecting a biological reason (noisier …
Comment: EdgeR Biological CVs
by
James
• 0
Thank you Gordon and Joseph
Comment: EdgeR Biological CVs
by
Joseph
• 0
I believe the published study provides answers to your questions. Yunshun Chen and Pedro Baldoni's recent papers on edgeR may also be of in…
Answer: EdgeR Biological CVs
by
Gordon Smyth
52k
I think your questions are answered by the published paper. You might also like to consult recent papers on edgeR by Yunshun Chen and Pedro…
Votes
Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Answer: Limma Interaction Effect with Covariates
Awards
• All
Popular Question
to
Dario Strbenac
★ 1.5k
Popular Question
to
Gordon Smyth
52k
Popular Question
to
Bob
▴ 10
Popular Question
to
shepherl
4.1k
Scholar
to
James W. MacDonald
67k
Locations
• All
UPF, Barcelona, Spain,
2 minutes ago
Germany,
41 minutes ago
India,
43 minutes ago
India,
47 minutes ago
Belgium,
1 hour ago
Traffic: 855 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6