Showing : affymetrix • reset
1
vote
2
replies
1.0k
views
Problem with results of Differential expression in Affymetrix microarray
limma MicroarrayData Microarray Affymetrix
2.4 years ago Mikołaj Mierzejewski • 0
1
vote
2
replies
1.3k
views
Affymetrix analysis of microarray by using Limma
limma MicroarrayData Microarray Affymetrix
2.4 years ago Mikołaj Mierzejewski • 0
0
votes
2
replies
2.1k
views
How to convert .CEL file to .VCF file?
vcf cell affymetrix
3.4 years ago jesus • 0
0
votes
1
reply
1.1k
views
Microarray: Build annotation for HT MG430PM affymetrix
AffymetrixChip Microarray affymetrix
updated 3.6 years ago by ★ 4.1k • written 3.6 years ago by • 0
0
votes
1
reply
2.5k
views
How to plot the RMA log2 normalised data from Affymetrix
log2 RMA Affymetrix affy Normalization
updated 3.7 years ago by ★ 4.0k • written 3.7 years ago by • 0
3
votes
4
replies
1.8k
views
AnnotationData package for Affymetrix HT MG-430 PM Array Plate
RNAseq Affymetrix Mouse
updated 4.1 years ago by ★ 4.1k • written 4.1 years ago by • 0
5
votes
5
replies
1.5k
views
Annotation issue while analyzing processed Affymetrix Human Exon 1.0 ST Arrays from Geoquery
affycoretools huex10sttranscriptcluster.db affymetrix Geoquery
updated 4.6 years ago by 67k • written 4.6 years ago by ▴ 830
0
votes
3
replies
889
views
Input files for Affymetrix platform
Affymetrix CEL TXT
updated 4.9 years ago by 67k • written 4.9 years ago by ▴ 50
0
votes
1
reply
1.6k
views
Is GCRMA normalization possible with oligo?
oligo pd.moe430a gcrma affymetrix normalization
updated 5.0 years ago by • 0 • written 5.8 years ago by ★ 4.1k
0
votes
7
replies
2.3k
views
Annotation of probes from Affymetrix and Illumina platforms in MACQ project ?
Affymetrix Illumina probes microarray annotation package
updated 5.5 years ago by ★ 4.1k • written 5.5 years ago by • 0
0
votes
1
reply
834
views
differential expression analysis of rice
microarray differential expression analysis GPL2025 affymetrix
updated 5.6 years ago by ★ 28k • written 5.6 years ago by • 0
3
votes
3
replies
1.3k
views
Limma: Don't have .CEL Affymatrix Files.
limma affymetrix
updated 6.1 years ago by 51k • written 6.1 years ago by ▴ 10
0
votes
1
reply
1.5k
views
Finding/Understanding Affy 6.0 Annotation File
affy affymetrix microarray SNP
6.2 years ago CantExitVIM ▴ 10
0
votes
1
reply
1.1k
views
Affy Mouse Annotation
annotation affymetrix
updated 6.6 years ago by 67k • written 6.6 years ago by • 0
4
votes
5
replies
2.5k
views
Retrieving probes mapping to gene ID in microarray analysis
microarray affymetrix probeset probe
updated 7.1 years ago by ★ 6.6k • written 7.1 years ago by • 0
0
votes
2
replies
1.6k
views
Quality control for Affymetrix GeneChip Mouse Gene 2.0 ST Array
qc qualitycontrol arrayqualitymetrics mouse gene st 2.0 affymetrix
updated 7.2 years ago by 67k • written 7.2 years ago by • 0
6
votes
7
replies
3.5k
views
Appropriate pre-processing pipeline for Human Transcriptome Array HTA 2.0 with oligo for DE analysis
oligo affycoretools hta2.0 affymetrix
updated 2.5 years ago by ▴ 10 • written 7.6 years ago by ▴ 830
1
vote
5
replies
2.0k
views
Filtering genes with missing Entrez ID using "nsFilter"
nsfilter affymetrix hugene10sttranscriptcluster.db annotation
updated 7.7 years ago by 67k • written 7.7 years ago by • 0
0
votes
0
replies
1.2k
views
QC for Affymetrix Arrays
affymetrix affymetrix microarrays aroma
8.4 years ago gaiusjaugustus • 0
0
votes
3
replies
1.7k
views
frma: "mogene.2.0.stfrmavecs" availability?? - Gene Barcode 3.0
frma affymetrix barcode
updated 8.8 years ago by ▴ 830 • written 8.8 years ago by • 0
3
votes
8
replies
2.6k
views
Error aroma.affymetrix [affxparser Fusion SDK exception]
affymetrix affxparser
updated 8.9 years ago by ★ 2.4k • written 8.9 years ago by ▴ 40
0
votes
1
reply
1.9k
views
PLIER normalization for Affymetrix GeneChip arrays?
microarray affymetrix oligo RMA normalization
updated 8.9 years ago by 67k • written 8.9 years ago by ▴ 20
3
votes
1
reply
1.7k
views
what is fitProbeLevelModel()? doing
affymetrix oligo microarray
updated 8.9 years ago by 67k • written 8.9 years ago by ▴ 20
5
votes
9
replies
4.4k
views
Looking for annotation file for Affymetrix SNP 6.0
copynumber snp affymetrix
9.0 years ago • updated 8.9 years ago KB ▴ 50
0
votes
1
reply
1.4k
views
extract raw expression values in oligo package
oligo affymetrix raw expression
9.2 years ago queso012 • 0
0
votes
0
replies
1.5k
views
News: Rebuilding annotation packages for Affymetrix Gene/Exon ST Arrays
affymetrix annotation microarray News
9.4 years ago James W. MacDonald 67k
0
votes
1
reply
1.3k
views
Filtering out lowly expressed genes on Affymetrix Gene ST arrays
Affymetrix Gene ST limma
9.5 years ago knaxerova ▴ 10
0
votes
0
replies
1.1k
views
Remove coexpressed gene pair modules using eisa package
isa2 eisa microarray affymetrix
9.5 years ago dhwani.dholakia • 0
2
votes
4
replies
2.4k
views
Analysis of Affymetrix Mouse Gene 2.0 ST arrays
affymetrix limma filtering
updated 9.5 years ago by 67k • written 9.5 years ago by • 0
2
votes
6
replies
1.8k
views
Appropriate use of the function mroast to find KEGG pathways for differential expression
mroast limma pathway analysis differential gene expression affymetrix
9.6 years ago svlachavas ▴ 830
0
votes
2
replies
1.7k
views
Possible Data integration of molecular data(transcriptomic) and imaging data from the same patients in R
data integration microarray bioconductor affymetrix biomarkers
updated 9.7 years ago by ★ 13k • written 9.7 years ago by ▴ 830
2
votes
2
replies
1.1k
views
Is it possible some statistical evaluation with a few replicates and one control in microarray data analysis in r
r bioconductor affymetrix differential gene expression
updated 9.7 years ago by 67k • written 9.7 years ago by ▴ 830
0
votes
0
replies
2.4k
views
MAplot: Binning grid too coarse for current (small) bandwidth
affy affymetrix affymetrics affymetrixchip
9.8 years ago neverstop • 0
6
votes
5
replies
2.0k
views
Limma ebayes returns a list with Affy pd.hugene.2.0.st arrays
ebayes expression affymetrix pd.hugene.2.0.st limma
updated 9.8 years ago by 51k • written 9.8 years ago by ▴ 200
0
votes
1
reply
2.1k
views
RNA degradation plot: why curves are so smooth?
normalization microarray affymetrix
updated 9.8 years ago by 67k • written 9.8 years ago by • 0
3
votes
15
replies
3.0k
views
Are the p-values supposed to be on the order of 10^-120?
limma affy bioconductor affymetrix
updated 10.1 years ago by 51k • written 10.1 years ago by • 0
36 results • Page 1 of 1
Recent ...
Replies
Comment: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Ai • 0
Hi Gordon, Thank you so much for answering my question and confirming that this is expected! I will go ahead note this down. Sincerely, …
Answer: Annotation for EPICv2 by icecreamlover • 0
Hello, I am also working on analyzing my data from EPICv2 using ChAMP. I used this resource as a guide: https://github.com/YuanTian1991/ChA…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k
And it doesn't matter if you're doing gene set analyses after, if the statistics are questionable to begin with.
Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k
If you're saying that (as an example) you have treated and control in both assay types, and you want to combine and make comparisons betwee…
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Guido Hooiveld ★ 4.1k
I have contacted NCBI, and meanwhile got an an answer. See below. It turns out that the official, HGNC-approved symbols are present in the…
Votes
Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim
A: How does edgeR cpm function calculate log(CPM) values?
Answer: DecideTest vs topTAGs in edgeR
Comment: DESeq Input from Salmon + tximport/tximeta
Comment: DESeq Input from Salmon + tximport/tximeta
Awards • All
Popular Question to Denise • 0
Popular Question to Assa Yeroslaviz ★ 1.5k
Popular Question to Gordon Smyth 51k
Popular Question to john • 0
Popular Question to James W. MacDonald 67k
Locations • All
United States, 11 minutes ago
UPF, Barcelona, Spain, 59 minutes ago
United States, 1 hour ago
Germany, 1 hour ago
WEHI, Melbourne, Australia, 3 hours ago
Traffic: 576 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6