Showing : affyio • reset
0
votes
1
reply
228
views
Custom CDF creation for HTA 2.0 array using GTF annotation
oligo oligoClasses pdInfoBuilder affycoretools affyio
16 days ago • updated 15 days ago Seymoo • 0
0
votes
3
replies
3.1k
views
*** caught segfault *** , cause 'memory not mapped'
affycoretools FRMA affyio AffymetrixDataTestFiles affy
updated 2.1 years ago by 68k • written 2.1 years ago by • 0
0
votes
1
reply
2.0k
views
gcrma background correction-saving output
cdf affy gcrma matchprobes affyio cdf affy gcrma matchprobes affyio
updated 6.3 years ago by 0 • written 18.4 years ago by ★ 2.2k
0
votes
2
replies
1.3k
views
trouble with installing "affyio"
affyio rstudio docker R 3.5.0
6.4 years ago shidaxia • 0
0
votes
1
reply
1.4k
views
Conda Env & biocLite("affyio") : < undefined symbol: gzclose >
Conda affyio error
6.5 years ago benjamin.saintpierre • 0
0
votes
1
reply
1.8k
views
simpleaffy segmentation fault
Survival probe genefilter affy affyio Survival probe genefilter affy affyio
updated 9.9 years ago by • 0 • written 18.3 years ago by ▴ 170
0
votes
9
replies
3.6k
views
R 2.15.1 ReadAffy error
affyio affyio
updated 12.8 years ago by ★ 1.2k • written 12.8 years ago by ★ 2.4k
0
votes
0
replies
1.3k
views
problem in ReadAffy function (affy and affyio libraries)
affyio affyio
15.0 years ago Groot, Philip de ▴ 630
0
votes
1
reply
1.2k
views
justGCRMA problem :(
GO Cancer gcrma matchprobes PROcess affyio GO Cancer gcrma matchprobes PROcess affyio
updated 16.1 years ago by ▴ 20 • written 16.2 years ago by 25k
0
votes
0
replies
1.3k
views
justGCRMA problem :(
GO gcrma matchprobes PROcess affyio GO gcrma matchprobes PROcess affyio
16.2 years ago Jacek Nowak ▴ 20
0
votes
9
replies
2.6k
views
affy package RMA results difference from R2.5 to R2.8
affy affyio affy affyio
updated 16.4 years ago by ▴ 140 • written 16.4 years ago by ▴ 360
0
votes
2
replies
1.7k
views
ReadAffy crashes on mac
Preprocessing affy convert affxparser affyio BUS Preprocessing affy convert affxparser
updated 16.7 years ago by ★ 1.2k • written 16.7 years ago by ▴ 40
0
votes
1
reply
1.4k
views
library(affyQCReport)-NA(arg1); arrayQualityMetrics-no end
Cancer cdf affy simpleaffy affyQCReport affyio arrayQualityMetrics Cancer cdf affy
updated 16.7 years ago by ★ 5.5k • written 16.7 years ago by ▴ 200
0
votes
4
replies
1.6k
views
Quality control;Missing value;installation
Cancer cdf affy affyQCReport affyio arrayQualityMetrics Cancer cdf affy affyQCReport
updated 16.7 years ago by ★ 5.5k • written 16.7 years ago by ▴ 200
0
votes
4
replies
3.4k
views
Problems installing bioconductor on ubuntu
affyio affyio
updated 16.8 years ago by ★ 13k • written 16.8 years ago by ▴ 20
0
votes
0
replies
1.3k
views
Problem with oneChannelGUI
GUI Biobase affy affyio oneChannelGUI preprocessCore GUI Biobase affy affyio
16.8 years ago Luc Vallieres ▴ 20
0
votes
2
replies
1.4k
views
affycoretools vennSelect problem
GO Survival annotate genefilter affy graph gcrma annaffy RBGL GOstats biomaRt affyio
updated 16.9 years ago by 68k • written 16.9 years ago by ▴ 30
0
votes
1
reply
967
views
affyio version update problem
affy affyio affy affyio
updated 16.9 years ago by 68k • written 16.9 years ago by ▴ 10
0
votes
2
replies
2.0k
views
cannot allocate vector of size 762 Mo ! One more time !
affy affyio trigger affy affyio trigger
updated 16.9 years ago by ★ 3.9k • written 16.9 years ago by ▴ 10
0
votes
3
replies
1.8k
views
Tiling arrays and their probes
cdf affyio cdf affyio
updated 17.0 years ago by ★ 13k • written 17.0 years ago by ★ 13k
0
votes
0
replies
1.0k
views
affyio install deps
affyio affyio
17.1 years ago Caroline Johnston ▴ 20
0
votes
1
reply
1.2k
views
normalize.quantil, different results, affy_1.14.1 and affy_1.16.0
affy affyio affy affyio
updated 17.2 years ago by ★ 1.2k • written 17.2 years ago by ▴ 380
0
votes
4
replies
1.9k
views
Help with Affy TilingArray makePDpackage
affyio oligo affyio oligo
updated 17.2 years ago by ★ 1.2k • written 17.2 years ago by ▴ 40
0
votes
0
replies
1.4k
views
Inf values using SAM (package=siggenes)
Annotation Survival Cancer genefilter affy limma maDB affyio Annotation Survival Cancer
17.3 years ago Holger Schwender ▴ 900
0
votes
1
reply
1.3k
views
Low-level analysis of custom microarrays
Microarray Normalization Cancer probe affy limma affyio Microarray Normalization Cancer
updated 17.3 years ago by ★ 13k • written 17.3 years ago by 25k
0
votes
0
replies
1.1k
views
Low-level analysis of custom microarrays
Microarray probe affy affyio Microarray probe affy affyio
17.3 years ago Teresa Colombo ▴ 10
0
votes
0
replies
1.3k
views
Inf values using SAM (package=siggenes)
Survival Cancer affy limma maDB affyio Survival Cancer affy limma maDB affyio
17.3 years ago Julian Lee ▴ 140
0
votes
0
replies
1.1k
views
Oligo package and tiling arrays - PM and MM
cdf affyio oligo BufferedMatrix cdf affyio oligo BufferedMatrix
17.4 years ago Naira Naouar ▴ 140
0
votes
0
replies
1.3k
views
MTP error
GO Survival multtest affy affydata annaffy affyPLM affyio GO Survival multtest affy
17.5 years ago Boel Brynedal ▴ 200
0
votes
1
reply
1.6k
views
Problem reading data with beadarray package
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 17.5 years ago by ▴ 460 • written 17.5 years ago by ▴ 10
0
votes
1
reply
1.1k
views
predict vsn with reference
Microarray affy vsn limma affyio Microarray affy vsn limma affyio
updated 17.6 years ago by ★ 13k • written 17.6 years ago by ▴ 10
0
votes
2
replies
1.4k
views
vsm2
Survival geneplotter affy vsn limma affyio Survival geneplotter affy vsn limma affyio
updated 17.6 years ago by ★ 13k • written 17.6 years ago by ▴ 70
0
votes
1
reply
1.3k
views
beadarray: combining several beadsummary data objects
Biobase geneplotter affy affyio beadarray Biobase geneplotter affy affyio beadarray
updated 17.6 years ago by ▴ 460 • written 17.6 years ago by ▴ 70
0
votes
0
replies
1.3k
views
code for technical replicates in Limma with affy
Survival cdf annotate affy limma gcrma matchprobes affyio Survival cdf annotate affy
17.6 years ago Richard Friedman ★ 2.0k
0
votes
0
replies
971
views
problem running dev version of GCRMA
hgu133plus2 cdf Biobase affy affyio hgu133plus2 cdf Biobase affy affyio
17.6 years ago Martin Morgan 25k
0
votes
0
replies
1.2k
views
problem with function to interrogate x:Map (exonmap)
Survival genefilter affy plier affyio exonmap Survival genefilter affy plier affyio
17.6 years ago Wolfgang Raffelsberger ▴ 160
0
votes
3
replies
2.5k
views
ReadAffy Error
Annotation ExperimentData cdf affy affyio Annotation ExperimentData cdf affy affyio
updated 17.7 years ago by ▴ 60 • written 17.7 years ago by ▴ 380
0
votes
1
reply
1.3k
views
Exonmap mapping problems
Survival genefilter affy plier affyio exonmap Survival genefilter affy plier affyio
updated 17.7 years ago by ▴ 120 • written 17.7 years ago by ▴ 10
0
votes
1
reply
1.2k
views
error in maanova matest() with affymetrix
cdf affy maanova affyio cdf affy maanova affyio
updated 17.7 years ago by 68k • written 17.7 years ago by ▴ 510
0
votes
3
replies
1.7k
views
pd.mapping 10Karray
BiocViews cdf affyio biocViews oligo pdInfoBuilder BufferedMatrix BiocViews BiocViews cdf
updated 17.7 years ago by ★ 7.4k • written 17.7 years ago by ▴ 10
0
votes
1
reply
1.4k
views
globaltest - multinomial model
Survival affy vsn limma globaltest affyio Survival affy vsn limma globaltest affyio
updated 17.7 years ago by ▴ 150 • written 17.7 years ago by ▴ 330
0
votes
0
replies
1.1k
views
Pulling significant gene ids from beadarray data
Biobase annotate affy affyio beadarray quantsmooth beadarraySNP lumi Biobase annotate
17.7 years ago Johnstone, Alice ▴ 410
0
votes
7
replies
1.9k
views
Problems with affycomp - quantile.default
cdf affy affycomp affyio cdf affy affycomp affyio
updated 17.7 years ago by 68k • written 17.7 years ago by ▴ 380
0
votes
3
replies
1.5k
views
GDS2eSet problems
Biobase affy convert affyio GEOquery Biobase affy convert affyio GEOquery
17.7 years ago Mcmahon, Wyatt ▴ 50
0
votes
1
reply
3.7k
views
RE : create an new AnnotatedDataFrame
Annotation Survival Yeast Biobase genefilter tkWidgets marray convert arrayMagic affyio
updated 17.7 years ago by 25k • written 17.7 years ago by ▴ 30
0
votes
1
reply
1.4k
views
beadarray - combing
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 17.7 years ago by ▴ 320 • written 17.7 years ago by ▴ 270
0
votes
1
reply
1.6k
views
ControlID Qcinfo slot in Illumina beadarray summary data?
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 17.7 years ago by ▴ 320 • written 17.7 years ago by ▴ 410
0
votes
1
reply
2.0k
views
create an new AnnotatedDataFrame
Survival Yeast Biobase genefilter tkWidgets marray convert arrayMagic affyio Survival
updated 17.7 years ago by 25k • written 17.7 years ago by ▴ 30
0
votes
1
reply
1.4k
views
An error of affylmGUI
cdf affy affylmGUI affyio cdf affy affylmGUI affyio
updated 17.7 years ago by ▴ 450 • written 17.7 years ago by ▴ 450
0
votes
1
reply
1.5k
views
Problems with expresso
Preprocessing cdf affy affyio Preprocessing cdf affy affyio
updated 17.7 years ago by 25k • written 17.7 years ago by ▴ 380
50 results • Page 1 of 1
Recent ...
Replies
Comment: GSEA preranked analysis downstream of DEseq2 by Ajay • 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file by janwilseo • 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender by donnycrimson • 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Votes
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
Awards • All
Popular Question to Dario Strbenac ★ 1.6k
Popular Question to etiennedanis • 0
Popular Question to javier.ruizramirez • 0
Autobiographer to Paul Harrison ▴ 100
Popular Question to mohammedtoufiq91 ▴ 10
Locations • All
United States, 11 minutes ago
EMBL Heidelberg, 3 hours ago
Australia, 3 hours ago
Netherlands, 6 hours ago
United States, 6 hours ago
Traffic: 563 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6