Showing : affyQCReport • reset
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Bioconductor 3.13 installer reports that affyQCReport is not available
Install 3.13 affyQCReport
updated 3.4 years ago by ▴ 10 • written 3.5 years ago by • 0
1
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3
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QC for Affymetrix miRNA 4.0 arrays: Error from qc/QCReport
simpleaffy affy affyQCReport
10.1 years ago federico.comoglio ▴ 100
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quality control of affy Chips for miRNA
miRNA cdf probe affy simpleaffy affyQCReport affycoretools arrayQualityMetrics miRNA cdf
14.1 years ago Assa Yeroslaviz ★ 1.5k
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1
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quality control of affy Chips for miRNA
miRNA cdf affy simpleaffy affyQCReport affycoretools miRNA cdf affy simpleaffy
updated 14.1 years ago by 68k • written 14.1 years ago by ★ 1.5k
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6
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1.7k
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Unable to Generate QC Report for mogene10stv1
Annotation GO GUI affy PROcess affyQCReport Annotation GO GUI affy PROcess affyQCReport
updated 14.3 years ago by 68k • written 14.3 years ago by ▴ 110
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8
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1.8k
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Unable to Generate QC Report for mogene10stv1
GO affyQCReport GO affyQCReport
updated 14.3 years ago by 68k • written 14.3 years ago by ▴ 110
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9
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2.5k
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Error coerce in AffyQCReport
Cancer Breast affyQCReport Cancer Breast affyQCReport
14.4 years ago Lorenzo Melchor ▴ 50
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3
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1.5k
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affyQCReport with drosgenome2cdf
affyQCReport affyQCReport
updated 14.4 years ago by 68k • written 14.4 years ago by ★ 1.5k
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drosophila2cdf in simpleaffy / affyQCReport
cdf simpleaffy affyQCReport cdf simpleaffy affyQCReport
14.4 years ago Assa Yeroslaviz ★ 1.5k
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2
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1.2k
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Quality control on Human Affymetrix Exon microarrays
GO Cancer probe affyQCReport GO Cancer probe affyQCReport
updated 14.7 years ago by ★ 13k • written 14.7 years ago by ★ 1.9k
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Affy exon array equivalents of QC packages (affyPLM, arrayQualityMetrics & affyQCReport)
Cancer affyPLM affyQCReport arrayQualityMetrics Cancer affyPLM affyQCReport
14.9 years ago Daniel Brewer ★ 1.9k
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.qcdef file
cdf probe affyQCReport cdf probe affyQCReport
15.3 years ago Leonor Palmeira ▴ 100
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1
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1.4k
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library(affyQCReport)-NA(arg1); arrayQualityMetrics-no end
Cancer cdf affy simpleaffy affyQCReport affyio arrayQualityMetrics Cancer cdf affy
updated 16.7 years ago by ★ 5.5k • written 16.7 years ago by ▴ 200
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4
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Quality control;Missing value;installation
Cancer cdf affy affyQCReport affyio arrayQualityMetrics Cancer cdf affy affyQCReport
updated 16.7 years ago by ★ 5.5k • written 16.7 years ago by ▴ 200
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16
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missing value
cdf affy affyQCReport cdf affy affyQCReport
updated 16.7 years ago by 16k • written 16.7 years ago by ▴ 200
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QC report
cdf affy affyQCReport cdf affy affyQCReport
16.7 years ago Yisong Zhen ▴ 10
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1
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2.2k
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.qcdef file
cdf affyQCReport cdf affyQCReport
updated 16.8 years ago by ▴ 400 • written 16.8 years ago by ▴ 20
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2
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question on affyQCReport vignette
affyQCReport affyQCReport
updated 16.9 years ago by ▴ 450 • written 16.9 years ago by ▴ 830
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Bioconductor web page
GO Cancer tkWidgets reposTools widgetTools simpleaffy affyQCReport affyio GO Cancer
17.8 years ago Seth Falcon ★ 7.4k
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9
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problem with function rma
Normalization rat2302 cdf genefilter affy simpleaffy affyQCReport affyio Normalization
updated 17.9 years ago by ★ 7.4k • written 17.9 years ago by ▴ 80
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3
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AffyQCReport: "I'm sorry, I do not know about chip type" (celeganscdf)
cdf genefilter affy simpleaffy affyQCReport cdf genefilter affy simpleaffy affyQCReport
updated 18.2 years ago by ★ 1.1k • written 18.2 years ago by ▴ 270
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8
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2.0k
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oligo on R 2.4.1?
GO Survival annotate genefilter affy affydata matchprobes affyQCReport affyio oligo GO
updated 18.2 years ago by ★ 7.4k • written 18.2 years ago by ★ 2.2k
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AffyQCReport: "I'm sorry, I do not know about chip type" (celeganscdf)
cdf probe genefilter affy simpleaffy affyQCReport cdf probe genefilter affy simpleaffy
18.2 years ago Wu, Xiwei ▴ 350
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1.7k
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error with AffyQCReport
cdf annotate affy limma RBGL simpleaffy GOstats affyQCReport cdf annotate affy limma
updated 18.2 years ago by ★ 13k • written 18.2 years ago by ▴ 830
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2
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problem with hist.default in affystart in package affycoretools
GO cdf annotate affy limma RBGL simpleaffy GOstats Category affyQCReport affyio GO cdf
updated 18.3 years ago by 68k • written 18.3 years ago by ▴ 890
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1
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1.2k
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qc function missing in Linux version of simpleaffy
cdf genefilter affy affydata simpleaffy affyQCReport affyio cdf genefilter affy affydata
updated 18.7 years ago by 68k • written 18.7 years ago by ▴ 160
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Why mm's changing after bg.adjust.gcrma?
drosgenome1 cdf Biobase reposTools affy gcrma affyPLM simpleaffy affyQCReport affyio cdf
18.9 years ago Jenny Drnevich ★ 2.2k
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966
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simpleAffy, custom chip error
GO cdf probe gcrma simpleaffy affyQCReport GO cdf probe gcrma simpleaffy affyQCReport
18.9 years ago Wittner, Ben ▴ 290
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4
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1.4k
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problem with loading affyQCReport
simpleaffy affyQCReport simpleaffy affyQCReport
updated 19.3 years ago by ★ 7.4k • written 19.3 years ago by ▴ 10
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Re: how to evaluate the arrays quality
affyQCReport affyQCReport
19.8 years ago Craig Parman ▴ 10
30 results • Page 1 of 1
Recent ...
Replies
Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30
I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k
The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k
> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…
Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0
Thank you so much for sharing the link.
Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
Votes
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
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