Showing : affyQCReport • reset
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Bioconductor 3.13 installer reports that affyQCReport is not available
Install 3.13 affyQCReport
updated 3.1 years ago by ▴ 10 • written 3.1 years ago by • 0
1
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3
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QC for Affymetrix miRNA 4.0 arrays: Error from qc/QCReport
simpleaffy affy affyQCReport
9.8 years ago federico.comoglio ▴ 100
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quality control of affy Chips for miRNA
miRNA cdf probe affy simpleaffy affyQCReport affycoretools arrayQualityMetrics miRNA cdf
13.7 years ago Assa Yeroslaviz ★ 1.5k
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1
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1.2k
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quality control of affy Chips for miRNA
miRNA cdf affy simpleaffy affyQCReport affycoretools miRNA cdf affy simpleaffy
updated 13.7 years ago by 67k • written 13.7 years ago by ★ 1.5k
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6
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1.6k
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Unable to Generate QC Report for mogene10stv1
Annotation GO GUI affy PROcess affyQCReport Annotation GO GUI affy PROcess affyQCReport
updated 13.9 years ago by 67k • written 13.9 years ago by ▴ 110
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8
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1.6k
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Unable to Generate QC Report for mogene10stv1
GO affyQCReport GO affyQCReport
updated 13.9 years ago by 67k • written 14.0 years ago by ▴ 110
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9
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Error coerce in AffyQCReport
Cancer Breast affyQCReport Cancer Breast affyQCReport
14.0 years ago Lorenzo Melchor ▴ 50
0
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3
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1.5k
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affyQCReport with drosgenome2cdf
affyQCReport affyQCReport
updated 14.0 years ago by 67k • written 14.0 years ago by ★ 1.5k
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drosophila2cdf in simpleaffy / affyQCReport
cdf simpleaffy affyQCReport cdf simpleaffy affyQCReport
14.0 years ago Assa Yeroslaviz ★ 1.5k
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2
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1.1k
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Quality control on Human Affymetrix Exon microarrays
GO Cancer probe affyQCReport GO Cancer probe affyQCReport
updated 14.3 years ago by ★ 13k • written 14.3 years ago by ★ 1.9k
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Affy exon array equivalents of QC packages (affyPLM, arrayQualityMetrics & affyQCReport)
Cancer affyPLM affyQCReport arrayQualityMetrics Cancer affyPLM affyQCReport
14.6 years ago Daniel Brewer ★ 1.9k
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.qcdef file
cdf probe affyQCReport cdf probe affyQCReport
14.9 years ago Leonor Palmeira ▴ 100
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library(affyQCReport)-NA(arg1); arrayQualityMetrics-no end
Cancer cdf affy simpleaffy affyQCReport affyio arrayQualityMetrics Cancer cdf affy
updated 16.3 years ago by ★ 5.5k • written 16.3 years ago by ▴ 200
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4
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1.5k
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Quality control;Missing value;installation
Cancer cdf affy affyQCReport affyio arrayQualityMetrics Cancer cdf affy affyQCReport
updated 16.3 years ago by ★ 5.5k • written 16.3 years ago by ▴ 200
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16
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2.1k
views
missing value
cdf affy affyQCReport cdf affy affyQCReport
updated 16.3 years ago by 16k • written 16.3 years ago by ▴ 200
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QC report
cdf affy affyQCReport cdf affy affyQCReport
16.3 years ago Yisong Zhen ▴ 10
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1
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2.1k
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.qcdef file
cdf affyQCReport cdf affyQCReport
updated 16.4 years ago by ▴ 400 • written 16.4 years ago by ▴ 20
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2
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question on affyQCReport vignette
affyQCReport affyQCReport
updated 16.5 years ago by ▴ 450 • written 16.5 years ago by ▴ 830
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Bioconductor web page
GO Cancer tkWidgets reposTools widgetTools simpleaffy affyQCReport affyio GO Cancer
17.5 years ago Seth Falcon ★ 7.4k
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problem with function rma
Normalization rat2302 cdf genefilter affy simpleaffy affyQCReport affyio Normalization
updated 17.5 years ago by ★ 7.4k • written 17.5 years ago by ▴ 80
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3
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AffyQCReport: "I'm sorry, I do not know about chip type" (celeganscdf)
cdf genefilter affy simpleaffy affyQCReport cdf genefilter affy simpleaffy affyQCReport
updated 17.8 years ago by ★ 1.1k • written 17.8 years ago by ▴ 270
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8
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1.9k
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oligo on R 2.4.1?
GO Survival annotate genefilter affy affydata matchprobes affyQCReport affyio oligo GO
updated 17.8 years ago by ★ 7.4k • written 17.8 years ago by ★ 2.2k
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0
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AffyQCReport: "I'm sorry, I do not know about chip type" (celeganscdf)
cdf probe genefilter affy simpleaffy affyQCReport cdf probe genefilter affy simpleaffy
17.8 years ago Wu, Xiwei ▴ 350
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4
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1.6k
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error with AffyQCReport
cdf annotate affy limma RBGL simpleaffy GOstats affyQCReport cdf annotate affy limma
updated 17.8 years ago by ★ 13k • written 17.8 years ago by ▴ 830
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2
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problem with hist.default in affystart in package affycoretools
GO cdf annotate affy limma RBGL simpleaffy GOstats Category affyQCReport affyio GO cdf
updated 17.9 years ago by 67k • written 17.9 years ago by ▴ 890
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1
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1.2k
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qc function missing in Linux version of simpleaffy
cdf genefilter affy affydata simpleaffy affyQCReport affyio cdf genefilter affy affydata
updated 18.4 years ago by 67k • written 18.4 years ago by ▴ 160
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Why mm's changing after bg.adjust.gcrma?
drosgenome1 cdf Biobase reposTools affy gcrma affyPLM simpleaffy affyQCReport affyio cdf
18.5 years ago Jenny Drnevich ★ 2.2k
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909
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simpleAffy, custom chip error
GO cdf probe gcrma simpleaffy affyQCReport GO cdf probe gcrma simpleaffy affyQCReport
18.5 years ago Wittner, Ben ▴ 290
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4
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1.3k
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problem with loading affyQCReport
simpleaffy affyQCReport simpleaffy affyQCReport
updated 19.0 years ago by ★ 7.4k • written 19.0 years ago by ▴ 10
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Re: how to evaluate the arrays quality
affyQCReport affyQCReport
19.5 years ago Craig Parman ▴ 10
30 results • Page 1 of 1
Recent ...
Replies
Answer: ANOVA like approach of edgeR by Gordon Smyth 51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data by Gordon Smyth 51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix? by NB • 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
Comment: Help with RSEM counts: do I transpose matrix? by NB • 0
Thank you. If I have questions about QC/normalization, do I ask them here or ask a new question?
Votes
Answer: Detecting genomic signatures of drug resistance breast cancer in transcriptom
Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
Answer: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
Comment: does anyone how to create rarefaction curves from a phyloseq object?
Answer: ANOVA like approach of edgeR
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