Showing : affyQCReport • reset
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Bioconductor 3.13 installer reports that affyQCReport is not available
Install 3.13 affyQCReport
updated 3.3 years ago by ▴ 10 • written 3.4 years ago by • 0
1
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3
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QC for Affymetrix miRNA 4.0 arrays: Error from qc/QCReport
simpleaffy affy affyQCReport
10.1 years ago federico.comoglio ▴ 100
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quality control of affy Chips for miRNA
miRNA cdf probe affy simpleaffy affyQCReport affycoretools arrayQualityMetrics miRNA cdf
14.0 years ago Assa Yeroslaviz ★ 1.5k
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1
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1.2k
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quality control of affy Chips for miRNA
miRNA cdf affy simpleaffy affyQCReport affycoretools miRNA cdf affy simpleaffy
updated 14.0 years ago by 68k • written 14.0 years ago by ★ 1.5k
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6
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1.7k
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Unable to Generate QC Report for mogene10stv1
Annotation GO GUI affy PROcess affyQCReport Annotation GO GUI affy PROcess affyQCReport
updated 14.2 years ago by 68k • written 14.2 years ago by ▴ 110
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8
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1.7k
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Unable to Generate QC Report for mogene10stv1
GO affyQCReport GO affyQCReport
updated 14.2 years ago by 68k • written 14.2 years ago by ▴ 110
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9
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Error coerce in AffyQCReport
Cancer Breast affyQCReport Cancer Breast affyQCReport
14.3 years ago Lorenzo Melchor ▴ 50
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3
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1.5k
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affyQCReport with drosgenome2cdf
affyQCReport affyQCReport
updated 14.3 years ago by 68k • written 14.3 years ago by ★ 1.5k
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drosophila2cdf in simpleaffy / affyQCReport
cdf simpleaffy affyQCReport cdf simpleaffy affyQCReport
14.3 years ago Assa Yeroslaviz ★ 1.5k
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2
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1.2k
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Quality control on Human Affymetrix Exon microarrays
GO Cancer probe affyQCReport GO Cancer probe affyQCReport
updated 14.6 years ago by ★ 13k • written 14.6 years ago by ★ 1.9k
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992
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Affy exon array equivalents of QC packages (affyPLM, arrayQualityMetrics & affyQCReport)
Cancer affyPLM affyQCReport arrayQualityMetrics Cancer affyPLM affyQCReport
14.8 years ago Daniel Brewer ★ 1.9k
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.qcdef file
cdf probe affyQCReport cdf probe affyQCReport
15.2 years ago Leonor Palmeira ▴ 100
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1
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1.4k
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library(affyQCReport)-NA(arg1); arrayQualityMetrics-no end
Cancer cdf affy simpleaffy affyQCReport affyio arrayQualityMetrics Cancer cdf affy
updated 16.6 years ago by ★ 5.5k • written 16.6 years ago by ▴ 200
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4
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1.6k
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Quality control;Missing value;installation
Cancer cdf affy affyQCReport affyio arrayQualityMetrics Cancer cdf affy affyQCReport
updated 16.6 years ago by ★ 5.5k • written 16.6 years ago by ▴ 200
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16
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2.2k
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missing value
cdf affy affyQCReport cdf affy affyQCReport
updated 16.6 years ago by 16k • written 16.6 years ago by ▴ 200
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QC report
cdf affy affyQCReport cdf affy affyQCReport
16.6 years ago Yisong Zhen ▴ 10
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1
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2.1k
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.qcdef file
cdf affyQCReport cdf affyQCReport
updated 16.7 years ago by ▴ 400 • written 16.7 years ago by ▴ 20
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2
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1.1k
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question on affyQCReport vignette
affyQCReport affyQCReport
updated 16.8 years ago by ▴ 450 • written 16.8 years ago by ▴ 830
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Bioconductor web page
GO Cancer tkWidgets reposTools widgetTools simpleaffy affyQCReport affyio GO Cancer
17.8 years ago Seth Falcon ★ 7.4k
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problem with function rma
Normalization rat2302 cdf genefilter affy simpleaffy affyQCReport affyio Normalization
updated 17.8 years ago by ★ 7.4k • written 17.8 years ago by ▴ 80
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3
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AffyQCReport: "I'm sorry, I do not know about chip type" (celeganscdf)
cdf genefilter affy simpleaffy affyQCReport cdf genefilter affy simpleaffy affyQCReport
updated 18.1 years ago by ★ 1.1k • written 18.1 years ago by ▴ 270
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8
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2.0k
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oligo on R 2.4.1?
GO Survival annotate genefilter affy affydata matchprobes affyQCReport affyio oligo GO
updated 18.1 years ago by ★ 7.4k • written 18.1 years ago by ★ 2.2k
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AffyQCReport: "I'm sorry, I do not know about chip type" (celeganscdf)
cdf probe genefilter affy simpleaffy affyQCReport cdf probe genefilter affy simpleaffy
18.1 years ago Wu, Xiwei ▴ 350
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4
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1.7k
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error with AffyQCReport
cdf annotate affy limma RBGL simpleaffy GOstats affyQCReport cdf annotate affy limma
updated 18.1 years ago by ★ 13k • written 18.1 years ago by ▴ 830
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2
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problem with hist.default in affystart in package affycoretools
GO cdf annotate affy limma RBGL simpleaffy GOstats Category affyQCReport affyio GO cdf
updated 18.2 years ago by 68k • written 18.2 years ago by ▴ 890
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1
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1.2k
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qc function missing in Linux version of simpleaffy
cdf genefilter affy affydata simpleaffy affyQCReport affyio cdf genefilter affy affydata
updated 18.6 years ago by 68k • written 18.6 years ago by ▴ 160
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0
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Why mm's changing after bg.adjust.gcrma?
drosgenome1 cdf Biobase reposTools affy gcrma affyPLM simpleaffy affyQCReport affyio cdf
18.8 years ago Jenny Drnevich ★ 2.2k
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953
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simpleAffy, custom chip error
GO cdf probe gcrma simpleaffy affyQCReport GO cdf probe gcrma simpleaffy affyQCReport
18.8 years ago Wittner, Ben ▴ 290
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4
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1.4k
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problem with loading affyQCReport
simpleaffy affyQCReport simpleaffy affyQCReport
updated 19.2 years ago by ★ 7.4k • written 19.2 years ago by ▴ 10
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Re: how to evaluate the arrays quality
affyQCReport affyQCReport
19.8 years ago Craig Parman ▴ 10
30 results • Page 1 of 1
Recent ...
Replies
Comment: Use of limma R package with targeted proteomics for DE analysis by svlachavas ▴ 840
Dear Gordon, thank you for returning back ! Actually the output is not "NPX"-as indeed it most frequent output for a lot of pannels-but as …
Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k
If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…
Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0
why aren't there any answers?
Comment: Too many significant genes when integrating gtex and tcga by Jane • 0
I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…
Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180
Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…
Votes
A: What is the "linear model" part used for in Limma?
Comment: Use of limma R package with targeted proteomics for DE analysis
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
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