Bioconductor Adjustment

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1.4k

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limma adjustment voom removeBatchEffect covariates

9 months ago sukeshinik5 ▴ 20

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1.1k

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DEP P.vals adjustment

updated 6.0 years ago by James W. MacDonald 68k • written 6.0 years ago by 826599 ▴ 10

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2.6k

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cell types differential expression adjustment mixtures rnaseq

updated 7.7 years ago by Ryan C. Thompson ★ 7.9k • written 7.7 years ago by aec ▴ 90

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5.4k

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RNA rnaseq Covariate adjustment deseq

updated 9.1 years ago by Michael Love 43k • written 9.1 years ago by sjs0282 • 0

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4.1k

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limma gene expression confounding adjustment paired

9.4 years ago Loodramon • 0

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7.1k

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limma covariate continuous categorical adjustment

updated 9.7 years ago by Gordon Smyth 52k • written 9.7 years ago by sg45653 • 0

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Comment: BiocParallel_1.40.1.tar.gz not available by Johan • 0

It worked. Thanks :)

Comment: Model performance for spline modelling of RNA-seq timecourses in edgeR by skiaphrene ▴ 10

Dear Gordon, Thank you very much for your prompt reply. I agree with the limma/edgeR perspective of including all potentially explanatory…

Comment: how to use `arrayWeightsQuick()`? by Gordon Smyth 52k

What sort of object is `expression`? Does it contain any missing values?

Answer: Deleted:No significant MVPs with a BH adjusted P-value below 0.05 by shocked.tick.zyet • 0

Dealing with those adjusted p-values in ChAMP can feel like a frustrating game of [Uno Online](https://unoonlinefree.com) , especially when…

Comment: DESeq2 lfcShrink drastic shrinkage by Nick • 0

Did you ever figure out the cause of this? I am seeing very similar results and wondering if you have advice on how you may have resolved t…

Votes

Answer: BiocParallel_1.40.1.tar.gz not available

Modelling gene program dynamics across time with {lemur}

A: DESeq2 one group vs multiple groups comparison in presence of batch effect

Comment: BiocParallel_1.40.1.tar.gz not available

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