Bioconductor Adjustment

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1.1k

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limma adjustment voom removeBatchEffect covariates

5 months ago • updated 4 months ago sukeshinik5 ▴ 20

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972

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DEP P.vals adjustment

updated 5.6 years ago by James W. MacDonald 67k • written 5.6 years ago by 826599 ▴ 10

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2.4k

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cell types differential expression adjustment mixtures rnaseq

updated 7.4 years ago by Ryan C. Thompson ★ 7.9k • written 7.4 years ago by aec ▴ 90

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5.2k

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RNA rnaseq Covariate adjustment deseq

updated 8.7 years ago by Michael Love 42k • written 8.7 years ago by sjs0282 • 0

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3.9k

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limma gene expression confounding adjustment paired

9.0 years ago Loodramon • 0

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6.8k

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limma covariate continuous categorical adjustment

updated 9.4 years ago by Gordon Smyth 51k • written 9.4 years ago by sg45653 • 0

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Answer: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0

https://diendannhansu.com/threads/hayal-sohbet-odalari.667004/ https://forum.realdigital.org/u/serkan https://animefagos.com/miembros/ser…

Comment: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0

https://www.hayalsohbet.net https://www.yerlichat.com https://www.yerlichat.net https://www.mavisim.net https://www.hayalchat.com http…

Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k

Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…

Comment: Handling Epic Array Data by Melisa Tecik • 0

Thanks a lot for the help. You saved my day

Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k

The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…

Votes

Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela

Answer: Allele frequencies for ALL alleles of one SNP ?

Answer: Is it recommended to analyze different tissues together when using edgeR

Answer: Using Affymetrix Custom Array

Awards • All

Popular Question to Fred Hutch (Recruiting) ▴ 40

Scholar to Gordon Smyth 51k

Popular Question to chase.mateusiak • 0

Scholar to James W. MacDonald 67k