Bioconductor Adjustment

Showing : adjustment • reset

votes

replies

1.2k

views

limma adjustment voom removeBatchEffect covariates

6 months ago sukeshinik5 ▴ 20

vote

1.0k

views

DEP P.vals adjustment

updated 5.7 years ago by James W. MacDonald 67k • written 5.7 years ago by 826599 ▴ 10

vote

replies

2.5k

views

cell types differential expression adjustment mixtures rnaseq

updated 7.5 years ago by Ryan C. Thompson ★ 7.9k • written 7.5 years ago by aec ▴ 90

votes

replies

5.3k

views

RNA rnaseq Covariate adjustment deseq

updated 8.8 years ago by Michael Love 43k • written 8.8 years ago by sjs0282 • 0

vote

replies

4.0k

views

limma gene expression confounding adjustment paired

9.2 years ago Loodramon • 0

votes

replies

6.9k

views

limma covariate continuous categorical adjustment

updated 9.5 years ago by Gordon Smyth 52k • written 9.5 years ago by sg45653 • 0

6 results • Page 1 of 1

Recent ...

Replies

Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k

R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…

Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0

Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…

Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0

EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…

Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0

Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…

Answer: combining raw counts and estimated counts by O'Brien • 0

It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…

Votes

A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor

A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

Awards • All