Bioconductor XVector

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IRanges XVector AtomicList

written 2.6 years ago by Pierre-Luc Germain ▴ 20

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4.0k

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XVector docker Install

3.2 years ago RobKo ▴ 10

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862

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XVector

updated 3.9 years ago by Martin Morgan 25k • written 3.9 years ago by robmaz77 ▴ 20

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S4Vectors IRanges XVector GenomicRanges scran

updated 6.1 years ago by Aaron Lun ★ 28k • written 6.1 years ago by Momo • 0

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2.5k

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bioconductor iranges s4vectors xvector r 3.3.2

updated 6.5 years ago by becker.gabriel ▴ 10 • written 6.5 years ago by chokoiboko • 0

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1.5k

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variantannotation xvector iranges

6.7 years ago Vivek.b ▴ 100

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subseq Xvector dnastringset

updated 7.7 years ago by Hervé Pagès 16k • written 7.7 years ago by Sophie • 0

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985

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xvector

7.8 years ago Charles Plessy ▴ 180

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2.5k

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software error gcrma Xvector iranges

8.5 years ago • updated 8.4 years ago gary_smith • 0

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Network Cancer IRanges XVector

10.4 years ago Hervé Pagès 16k

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Cancer XVector

10.4 years ago Hervé Pagès 16k

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IRanges GenomicRanges VariantTools XVector IRanges GenomicRanges VariantTools XVector

updated 11.2 years ago by Michael Lawrence ★ 11k • written 11.2 years ago by heyi xiao ▴ 360

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5.0k

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XVector XVector

updated 11.5 years ago by Hervé Pagès 16k • written 11.5 years ago by Pengcheng Yang ▴ 60

13 results • Page 1 of 1

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Comment: Identifying potentially associated gene set to drug response using GSVA by kl2023gege • 0

Thanks for sharing. You gotta check out Sprunki Phase Games on [Sprunki Phase](https://sprunkiphase.net). It's a wild ride of tunes and tw…

Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Votes

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

C: How does edgeR cpm function calculate log(CPM) values?

Answer: Selection of correct coefficients or contrasts in DESeq2

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Popular Question to bastien_chassagnol • 0