Bioconductor WGCNA package

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wgcna WGCNA wgcna package

5.2 years ago coyoung ▴ 10

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wgcna wgcna package modulepreservation

written 6.3 years ago by bekah ▴ 40

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wgcna wgcna package

6.3 years ago Jack • 0

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wgcna package wgcna

6.4 years ago anni.djurhuus • 0

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wgcna package TCGA LocusLinkID genecode ensembl

updated 6.5 years ago by James W. MacDonald 68k • written 6.5 years ago by modarzi ▴ 10

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wgcna package software error

updated 6.5 years ago by Peter Langfelder ★ 3.0k • written 6.5 years ago by giuseppe0525 • 0

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wgcna wgcna package consensus

6.5 years ago 2323982403 ▴ 60

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wgcna wgcna package

6.6 years ago antoinefelden ▴ 10

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WGCNA wgcna package

updated 6.6 years ago by Peter Langfelder ★ 3.0k • written 6.6 years ago by bdy8 ▴ 10

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wgcna wgcna package

6.7 years ago • updated 6.6 years ago 2323982403 ▴ 60

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WGCNA wgcna package wgcna bicor

6.7 years ago bekah ▴ 40

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wgcna package

updated 6.7 years ago by Peter Langfelder ★ 3.0k • written 6.7 years ago by bekah ▴ 40

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RNA-seq WGCNA package soft power

6.7 years ago modarzi ▴ 10

13 results • Page 1 of 1

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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

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Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

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