Showing : Vranges • reset
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Formal class VRanges versus Large VRanges
somaticsignatures vranges readvcfasvranges
6.5 years ago guillaume.dachy • 0
3
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4
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2.1k
views
Problem when transforming Platypus vcf to VRanges
variantannotation vcf readvcf vranges
updated 6.6 years ago by ★ 11k • written 6.6 years ago by • 0
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2
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1.4k
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Error: invalid class "VRanges" object
variantannotation VRanges R Rle
updated 6.7 years ago by ★ 6.8k • written 6.7 years ago by • 0
1
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2
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2.0k
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Trouble while concatenating VRanges object ()
somaticsignatures somaticsignatures package readvcfasvranges vranges
7.6 years ago • updated 7.5 years ago guillaume.dachy • 0
0
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3
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1.5k
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about VRanges and filtering somatic variants
vranges vcf to vranges
8.1 years ago Bogdan ▴ 670
1
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4
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2.1k
views
Converting VCF to VRanges
somaticsignatures vranges
updated 8.7 years ago by ★ 1.3k • written 8.7 years ago by ▴ 10
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2
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1.8k
views
Combining GRange/VRange objects
granges vranges readvcfasvranges somaticsignatures
updated 8.9 years ago by ★ 11k • written 8.9 years ago by • 0
3
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9
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2.4k
views
SomaticSignatures mutationContext (char ',') not in lookup table
SomaticSignatures mutationContext VRanges
updated 9.5 years ago by ★ 1.3k • written 9.5 years ago by ▴ 10
2
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3
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2.6k
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Metadata Missing from vcf when reading in with readVcfAsVRanges
variantannotation vranges readvcf readvcfasvranges metadata
10.0 years ago summerela • 0
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3.5k
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Add Custom Annotations to Multi-Sample VCF with VariantAnnotation() package
variantannotation granges DNAStringSetList findoverlaps Vranges
10.0 years ago summerela • 0
10 results • Page 1 of 1
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Comment: Use of limma R package with targeted proteomics for DE analysis by svlachavas ▴ 840
Dear Gordon, thanks a million for your reply (just saw it, did not get any notification through email) !! Regarding the log2 transformation…
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Yes, you can still do non-directional tests using cameraPR(), but it's not quite as easy as it was using the original camera() function as …
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You can use batch correction on the person ID and then continue WGCNA as usual using the corrected matrix. You can use e.g. sva::ComBat or …
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The function uses ggplot2, so you need `+ ggtitle('title')`. Please take a ggplot2 tutorial for details.
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I apologize, but I am still perplexed. I need to know the exact type of replication. Do we have many samples taken from the same tumor? You…
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Answer: Use of limma R package with targeted proteomics for DE analysis
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Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Suggesting changing the "reply-to" field to the mailing list address.
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