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VisANT
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Comparable network visualisation of consensus modules between two species
WGCNA
VisANT
network visualization
6.6 years ago
Ira
▴ 10
0
votes
6
replies
2.6k
views
WGCNA exporting for Visant visualization
wgcna
visant
updated 7.6 years ago by
Peter Langfelder
★ 3.0k • written 7.6 years ago by
arom2
• 0
0
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1
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2.7k
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question on visANT after WGCNA
wgcna
visant
module
hub genes
updated 8.7 years ago by
etycksen
• 0 • written 8.7 years ago by
agattorosso
• 0
3 results • Page
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Answer: [How to construct a model.matrix ]
by
Gordon Smyth
51k
> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
by
rania.alanany
• 0
Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…
Comment: Merge Replicates vs Mixed Model
by
abadgerw
• 0
@gabrielhoffman any insight?
Comment: makeContrastsDream for Interaction
by
abadgerw
• 0
@gabrielhoffman any insight?
Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta
by
Michael Love
42k
That is the rows that did converge.
Votes
A: Some questions for remove batch effect by using mnnCorrect
A: Recommendations for combining multiple 10x runs into one SingleCellExperiment
Answer: [How to construct a model.matrix ]
Answer: Handling biological replicates in DESeq2
Comment: biomaRt rnorvegicus_gene_ensembl not available anymore
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