Bioconductor ViSEAGO

Showing : ViSEAGO • reset

0

votes

1

reply

711

views

ViSEAGO

updated 2.6 years ago by Mike Smith ★ 6.6k • written 2.6 years ago by Rachel • 0

0

votes

1

reply

1.2k

views

gene_ontology GOID ViSEAGO GO.db custom2GO

3.3 years ago jabbar_campbell • 0

0

votes

0

replies

733

views

ViSEAGO

3.6 years ago tim.meese • 0

3 results • Page 1 of 1

Recent ...

Replies

Comment: How many of my genes from my gene list are in each KEGG pathway? by josephasmith1310 • 0

> You can compare the number in the column setSize versus the number of > genes in core_enrichment. The former corresponds to the number of…

Comment: EuroBioC2024 abstract submission is open! by Esperan • 0

Great information about the EuroBioC2024 conference! https://openreview.net/group?id=bioconductor.org/EuroBioC/2024/Conferences [slope](htt…

Answer: Combining RNAseq and microarray data using edgeR/limma-voom by Gordon Smyth 51k

I agree with James, although I tend to combine analyses using geneset tests rather than by meta analysis tools like GeneMeta. > My questio…

Comment: Adjusted p-values become NA when sub-setting samples by txema.heredia • 0

Thanks! I've been looking into DESeq2's code and, indeed, I get matching results when running manually the code inherited from the `genefi…

Answer: DESeq2 interaction between cancer cells and microenvironment cells by Michael Love 42k

I don't really know what you mean by "come from the contamination". You can look at the main effects and the interaction, but I don't know …

Votes

Answer: How do I merge a list of GRanges?

A: p.adjust BH generates duplicate values

Awards • All

Supporter to Paul Harrison ▴ 100

Popular Question to Mikhail Dozmorov ▴ 30