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Venndiagram
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1.1k
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Online Venn diagram generator where I can paste text files containing gene name lists to get the diagram
Venndiagram
files
text
22 months ago
ratto
• 0
0
votes
0
replies
836
views
draw.pairwise.venn: Misplaced line connecting external area label
venndiagram
6.0 years ago
salamandra
▴ 20
1
vote
4
replies
1.2k
views
Remove box frame from vennDiagram plot in limma
Limma
venndiagram
r
updated 2.9 years ago by
luca.soldini
• 0 • written 6.3 years ago by
bajwa.m
• 0
1
vote
4
replies
1.7k
views
venDiagram after limma showing more genes after specifying up or down regulated specifically
venn diagram
venndiagram
limma
microarray
differential expression
updated 6.4 years ago by
James W. MacDonald
67k • written 6.4 years ago by
A
▴ 40
1
vote
2
replies
2.1k
views
How to scale circle sizes in VennDiagram using draw.triple.venn
VennDiagram
venn diagram
circle size
draw.triple.venn
updated 7.9 years ago by
James W. MacDonald
67k • written 7.9 years ago by
Gary
▴ 20
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Comment: Identical samples after deseq2 batch effect removal
by
Michael Love
42k
I'm adding my comment to the threaded section ... I don't have any suggestions here but whatever method you're using is not appropriate up…
Comment: ANOVA like approach of edgeR
by
Yunshun Chen
▴ 880
If you do it this way, the dispersion estimates would be much higher than they should (as the cell type difference is not accounted for in …
Comment: ANOVA like approach of edgeR
by
SamGG
▴ 350
Simply remove the cell type from the model. design <- model.matrix(~targets$Status)
Answer: ANOVA like approach of edgeR
by
Yunshun Chen
▴ 880
You could try the followings: > design <- model.matrix(~ 0 + group) > contrast <- makeContrasts(PvsL = 0.5*(L.pregnant + B.pregnan…
Answer: Identical samples after deseq2 batch effect removal
by
maripane
• 0
Thanks Michael, so is there a way to work around this issue? Can I somehow make sure I can remove this batch effects without overcorrecti…
Votes
Answer: ANOVA like approach of edgeR
A: ANOVA-like test with edgeR
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
A: TopGO: How to retrieve the gene list related to a GO ID ?
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