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VariantFiltering
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Variant Filtering on very large VCF files
VariantAnnotation
VariantFiltering
9 months ago
Bogdan
▴ 670
0
votes
1
reply
432
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VariantFiltering error
VariantFiltering
updated 12 months ago by
Robert Castelo
★ 3.3k • written 12 months ago by
Andrew Beggs
▴ 90
0
votes
1
reply
1.6k
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Confused about understanding the output and statistics of BAM file after STAR aligning
RNAseq123
VariantFiltering
Alignment
VariantAnnotation
updated 20 months ago by
James W. MacDonald
66k • written 20 months ago by
Mohamed
▴ 30
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3
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1.4k
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library VaraintFiltration looking for explanation of pedigree file
bioconductor
variantfiltering
6.9 years ago
Claus.Hultschig
• 0
3
votes
2
replies
1.5k
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filtering VCF files
variantannotation
variantfiltering
updated 7.3 years ago by
Michael Lawrence
★ 11k • written 7.3 years ago by
Bogdan
▴ 670
0
votes
1
reply
1.2k
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Problems with autosomalRecessiveHomozygous
VariantFiltering
9.0 years ago
claire.simpson
• 0
4
votes
0
replies
1.5k
views
News:
Hands-on Bioconductor course, 7 Sept 2015, Tokyo
sequencing
transcription
variantfiltering
annotation
News
9.0 years ago
Matthew Ritchie
▴ 1000
1
vote
1
reply
1.4k
views
retrieving phastConsScores via 'scores' from 'VariantFiltering' shows inconsistency
variantfiltering
phastcons
updated 9.2 years ago by
Robert Castelo
★ 3.3k • written 9.2 years ago by
Stefanie Tauber
▴ 40
0
votes
0
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1.8k
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problems installing VariantFiltering package
VariantFiltering
VariantFiltering
10.1 years ago
Robert Castelo
★ 3.3k
9 results • Page
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Answer: Most sensible approach to a `stage*condition` design in DESeq2
by
swbarnes2
★ 1.4k
Doing a stage_treatment grouping is not the same as doing stage * treatment. You can use stage * treatment to compare one subgroup to anot…
Comment: Ranking the GSEA Results
by
Lluís Revilla Sancho
▴ 730
You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…
Answer: Create a Graph w/ Only the Genes Interaction
by
Antonio
• 0
Thank you all, I solved my issue by creating a for loop. Cheers!
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…
Votes
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
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