Bioconductor VariantFiltering

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VariantAnnotation VariantFiltering

18 months ago Bogdan ▴ 670

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633

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VariantFiltering

updated 21 months ago by Robert Castelo ★ 3.4k • written 21 months ago by Andrew Beggs ▴ 90

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RNAseq123 VariantFiltering Alignment VariantAnnotation

updated 2.4 years ago by James W. MacDonald 68k • written 2.4 years ago by Mohamed ▴ 30

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bioconductor variantfiltering

7.6 years ago Claus.Hultschig • 0

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variantannotation variantfiltering

updated 8.1 years ago by Michael Lawrence ★ 11k • written 8.1 years ago by Bogdan ▴ 670

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VariantFiltering

9.7 years ago claire.simpson • 0

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sequencing transcription variantfiltering annotation News

9.8 years ago Matthew Ritchie ▴ 1000

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variantfiltering phastcons

updated 10.0 years ago by Robert Castelo ★ 3.4k • written 10.0 years ago by Stefanie Tauber ▴ 40

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1.9k

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VariantFiltering VariantFiltering

10.9 years ago Robert Castelo ★ 3.4k

9 results • Page 1 of 1

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Answer: Model performance for spline modelling of RNA-seq timecourses in edgeR by Gordon Smyth 52k

I don't understand your question, because there is no difference between limma or glmFit or glmQLFit in terms of spline modeling or the tes…

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

Perhaps edgeR's upperquartile normalization handles this better, the MA looks a lot more centered at 0 ![enter image description here][1]…

Answer: DESeq2 - am I extracting results incorrectly? by James W. MacDonald 68k

If I assume that Followup gets converted to T3 and Treatment to LowSug somewhere along the line (and therefore GroupTreatment.Followup is G…

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

I noticed the dual populations as well, when using csaw this is controlled for. Regarding the DE profile, given this disease condition we e…

Answer: Origin of the labels for the SingleCellMultiModal dataset by ATpoint ★ 4.8k

If you check the underlying code a bit you find that there is a file with data sources: ```r modes_file <- system.file("extdata", "metadat…

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Answer: Improving performance of edgeR and limma while adjusting for multiple confounder

Comment: DESeq - help with pair wise comparisons

Answer: Is random access by row index possible for an indexed VCF file?

Answer: SingleR with multiple single cell references

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