15 months ago
Bogdan
▴
670
0
votes
0
replies
849
views
0
votes
1
reply
567
views
updated 18 months ago by
Robert Castelo
★
3.4k
•
written 18 months ago by
Andrew Beggs
▴
90
0
votes
1
reply
2.0k
views
updated 2.1 years ago by
James W. MacDonald
67k
•
written 2.1 years ago by
Mohamed
▴
30
0
votes
3
replies
1.6k
views
3
votes
2
replies
1.7k
views
updated 7.8 years ago by
Michael Lawrence
★
11k
•
written 7.8 years ago by
Bogdan
▴
670
0
votes
1
reply
1.3k
views
9.4 years ago
claire.simpson
•
0
4
votes
0
replies
1.6k
views
9.5 years ago
Matthew Ritchie
▴
1000
1
vote
1
reply
1.5k
views
updated 9.7 years ago by
Robert Castelo
★
3.4k
•
written 9.7 years ago by
Stefanie Tauber
▴
40
0
votes
0
replies
1.9k
views
10.6 years ago
Robert Castelo
★
3.4k
Recent ...
Replies
Comment: Normalizing batch effects using technical replicates for DGE analysis between tw
by
Gordon Smyth
52k
Since the intra-block correlation is negative, it would be best to remove `block` from the model.
My experience with genetically identical…
Comment: Normalizing batch effects using technical replicates for DGE analysis between tw
by
anna.cot.anna.cot
▴
30
Thank you! This is actually quite close to my real dataset. I simplified the names to make it easier as an example, but I have now correcte…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
by
Tim Peters
▴
200
Hi Xiaofei,
Is it possible to generate a matrix of beta values or M-values with rownames as probe IDs from this data? If so, cpg.annotate(…
Comment: Normalizing batch effects using technical replicates for DGE analysis between tw
by
Gordon Smyth
52k
That looks basically correct, although the terms that you are inputing to `makeContrasts` do not match the condition names in the targets f…
Comment: Normalizing batch effects using technical replicates for DGE analysis between tw
by
James W. MacDonald
67k
Oh, right. There's two ways to enter code. If you are in the middle of a sentence and you want to include a function name, you wrap the nam…
Votes
Awards
• All
Popular Question to
Jenny Drnevich
★
2.0k
Popular Question to
martin.grigorov
▴
10
Scholar to
James W. MacDonald
67k
Popular Question to
Benjamin
▴
20
Popular Question to
María Calvo
•
0
Locations
• All
The city by the bay, 2 minutes ago
France, 17 minutes ago
Macao, 33 minutes ago
EMBL Heidelberg, 42 minutes ago
China, 50 minutes ago
The city by the bay, 2 minutes ago
France, 17 minutes ago
Macao, 33 minutes ago
EMBL Heidelberg, 42 minutes ago
China, 50 minutes ago
Traffic: 801 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6