Bioconductor VariantFiltering

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VariantAnnotation VariantFiltering

16 months ago Bogdan ▴ 670

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VariantFiltering

updated 19 months ago by Robert Castelo ★ 3.4k • written 19 months ago by Andrew Beggs ▴ 90

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RNAseq123 VariantFiltering Alignment VariantAnnotation

updated 2.2 years ago by James W. MacDonald 67k • written 2.2 years ago by Mohamed ▴ 30

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bioconductor variantfiltering

7.4 years ago Claus.Hultschig • 0

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variantannotation variantfiltering

updated 7.8 years ago by Michael Lawrence ★ 11k • written 7.8 years ago by Bogdan ▴ 670

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VariantFiltering

9.5 years ago claire.simpson • 0

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sequencing transcription variantfiltering annotation News

9.6 years ago Matthew Ritchie ▴ 1000

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variantfiltering phastcons

updated 9.7 years ago by Robert Castelo ★ 3.4k • written 9.8 years ago by Stefanie Tauber ▴ 40

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1.9k

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VariantFiltering VariantFiltering

10.7 years ago Robert Castelo ★ 3.4k

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Answer: Curiously shaped volcano plot with using oarfish + swish to do differential gene by Michael Love 43k

See swish vignette, these are explained.

Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Great thanks for posting the issue and sticking with it Annaleigh

Comment: Problems with oarfish + tximport + swish by brown.annaleigh • 0

Awesome possum! Update works!! Thank you so much for the help and guidance!

Comment: Postdoctoral Researcher in Spatial Gene Regulatory Networks underlying Stomatal by iqratechnology4 • 0

Iqra Technology is IT Solutions and Services Company. We are salesforce and Microsoft partner company. https://iqratechnology.com/

Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt? by James W. MacDonald 67k

> BTW, shouldn't you be using keep.lib.sizes = F and re-do the calcNormFactors() after filtering of the dglst low-expression ENSGs, as Gord…

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Answer: Error in download.file for TCGAutils::symbolsToRanges

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Answer: Limma Interaction Effect with Covariates

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