Bioconductor VariantFiltering

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VariantAnnotation VariantFiltering

17 months ago Bogdan ▴ 670

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VariantFiltering

updated 20 months ago by Robert Castelo ★ 3.4k • written 20 months ago by Andrew Beggs ▴ 90

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RNAseq123 VariantFiltering Alignment VariantAnnotation

updated 2.3 years ago by James W. MacDonald 68k • written 2.3 years ago by Mohamed ▴ 30

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bioconductor variantfiltering

7.5 years ago Claus.Hultschig • 0

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variantannotation variantfiltering

updated 7.9 years ago by Michael Lawrence ★ 11k • written 7.9 years ago by Bogdan ▴ 670

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VariantFiltering

9.6 years ago claire.simpson • 0

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sequencing transcription variantfiltering annotation News

9.7 years ago Matthew Ritchie ▴ 1000

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variantfiltering phastcons

updated 9.8 years ago by Robert Castelo ★ 3.4k • written 9.8 years ago by Stefanie Tauber ▴ 40

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1.9k

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VariantFiltering VariantFiltering

10.8 years ago Robert Castelo ★ 3.4k

9 results • Page 1 of 1

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Answer: Plot title for PCA in DESeq2 by ATpoint ★ 4.7k

The function uses ggplot2, so you need `+ ggtitle('title')`. Please take a ggplot2 tutorial for details.

Comment: DESeq2 It is correct to use interaction term for patient variability? by Bradley • 0

I apologize, but I am still perplexed. I need to know the exact type of replication. Do we have many samples taken from the same tumor? You…

Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k

VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Comment: WGCNA by pammelala304 • 0

Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.

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Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

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