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VRanges
•
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970
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Formal class VRanges versus Large VRanges
somaticsignatures
vranges
readvcfasvranges
6.7 years ago
guillaume.dachy
• 0
3
votes
4
replies
2.1k
views
Problem when transforming Platypus vcf to VRanges
variantannotation
vcf
readvcf
vranges
updated 6.8 years ago by
Michael Lawrence
★ 11k • written 6.8 years ago by
david.mas
• 0
0
votes
2
replies
1.5k
views
Error: invalid class "VRanges" object
variantannotation
VRanges
R
Rle
updated 6.8 years ago by
Valerie Obenchain
★ 6.8k • written 6.8 years ago by
Jayendra Shinde
• 0
1
vote
2
replies
2.1k
views
Trouble while concatenating VRanges object ()
somaticsignatures
somaticsignatures package
readvcfasvranges
vranges
7.7 years ago • updated 7.6 years ago
guillaume.dachy
• 0
0
votes
3
replies
1.6k
views
about VRanges and filtering somatic variants
vranges
vcf to vranges
8.3 years ago
Bogdan
▴ 670
1
vote
4
replies
2.2k
views
Converting VCF to VRanges
somaticsignatures
vranges
updated 8.8 years ago by
Julian Gehring
★ 1.3k • written 8.8 years ago by
arsala521
▴ 10
1
vote
2
replies
1.8k
views
Combining GRange/VRange objects
granges
vranges
readvcfasvranges
somaticsignatures
updated 9.1 years ago by
Michael Lawrence
★ 11k • written 9.1 years ago by
jpluta26
• 0
3
votes
9
replies
2.5k
views
SomaticSignatures mutationContext (char ',') not in lookup table
SomaticSignatures mutationContext
VRanges
updated 9.7 years ago by
Julian Gehring
★ 1.3k • written 9.7 years ago by
tesa.severson
▴ 10
2
votes
3
replies
2.7k
views
Metadata Missing from vcf when reading in with readVcfAsVRanges
variantannotation
vranges
readvcf
readvcfasvranges
metadata
10.2 years ago
summerela
• 0
3
votes
5
replies
3.6k
views
Add Custom Annotations to Multi-Sample VCF with VariantAnnotation() package
variantannotation
granges
DNAStringSetList
findoverlaps
Vranges
10.2 years ago
summerela
• 0
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Comment: Gene Ontology (GO) Analysis
by
Tom
• 0
[Locksmith near me][1] Hello, I'm learning about Gene Ontology analysis. I'm trying to understand the difference between the hyperGTest fun…
Comment: DiffBind; Error: No sites have activity greater than filter value
by
etiennedanis
• 0
Same issue here as well. This is very weird because I never had this issue before. I started observing this issue with a new ATAC-seq da…
Comment: GSEA preranked analysis downstream of DEseq2
by
Ajay
• 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file
by
janwilseo
• 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped"
by
James W. MacDonald
68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Votes
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
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