Bioconductor VRanges

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956

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somaticsignatures vranges readvcfasvranges

6.6 years ago guillaume.dachy • 0

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2.1k

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variantannotation vcf readvcf vranges

updated 6.8 years ago by Michael Lawrence ★ 11k • written 6.8 years ago by david.mas • 0

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1.5k

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variantannotation VRanges R Rle

updated 6.8 years ago by Valerie Obenchain ★ 6.8k • written 6.8 years ago by Jayendra Shinde • 0

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2.0k

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somaticsignatures somaticsignatures package readvcfasvranges vranges

7.7 years ago • updated 7.6 years ago guillaume.dachy • 0

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1.6k

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vranges vcf to vranges

8.2 years ago Bogdan ▴ 670

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2.2k

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somaticsignatures vranges

updated 8.8 years ago by Julian Gehring ★ 1.3k • written 8.8 years ago by arsala521 ▴ 10

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1.8k

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granges vranges readvcfasvranges somaticsignatures

updated 9.0 years ago by Michael Lawrence ★ 11k • written 9.0 years ago by jpluta26 • 0

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2.5k

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SomaticSignatures mutationContext VRanges

updated 9.6 years ago by Julian Gehring ★ 1.3k • written 9.6 years ago by tesa.severson ▴ 10

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2.7k

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variantannotation vranges readvcf readvcfasvranges metadata

10.1 years ago summerela • 0

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3.6k

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variantannotation granges DNAStringSetList findoverlaps Vranges

10.1 years ago summerela • 0

10 results • Page 1 of 1

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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

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Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

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