Showing : VRanges • reset
0
votes
0
replies
937
views
Formal class VRanges versus Large VRanges
somaticsignatures vranges readvcfasvranges
6.5 years ago guillaume.dachy • 0
3
votes
4
replies
2.1k
views
Problem when transforming Platypus vcf to VRanges
variantannotation vcf readvcf vranges
updated 6.7 years ago by ★ 11k • written 6.7 years ago by • 0
0
votes
2
replies
1.4k
views
Error: invalid class "VRanges" object
variantannotation VRanges R Rle
updated 6.7 years ago by ★ 6.8k • written 6.7 years ago by • 0
1
vote
2
replies
2.0k
views
Trouble while concatenating VRanges object ()
somaticsignatures somaticsignatures package readvcfasvranges vranges
7.6 years ago • updated 7.5 years ago guillaume.dachy • 0
0
votes
3
replies
1.6k
views
about VRanges and filtering somatic variants
vranges vcf to vranges
8.2 years ago Bogdan ▴ 670
1
vote
4
replies
2.1k
views
Converting VCF to VRanges
somaticsignatures vranges
updated 8.7 years ago by ★ 1.3k • written 8.7 years ago by ▴ 10
1
vote
2
replies
1.8k
views
Combining GRange/VRange objects
granges vranges readvcfasvranges somaticsignatures
updated 8.9 years ago by ★ 11k • written 8.9 years ago by • 0
3
votes
9
replies
2.5k
views
SomaticSignatures mutationContext (char ',') not in lookup table
SomaticSignatures mutationContext VRanges
updated 9.5 years ago by ★ 1.3k • written 9.5 years ago by ▴ 10
2
votes
3
replies
2.6k
views
Metadata Missing from vcf when reading in with readVcfAsVRanges
variantannotation vranges readvcf readvcfasvranges metadata
10.0 years ago summerela • 0
3
votes
5
replies
3.5k
views
Add Custom Annotations to Multi-Sample VCF with VariantAnnotation() package
variantannotation granges DNAStringSetList findoverlaps Vranges
10.0 years ago summerela • 0
10 results • Page 1 of 1
Recent ...
Replies
Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k
No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…
Answer: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k
I strongly recommend to not concern yourself with these sorts of marginal problems because you're entering a realm in which you're entirely…
Comment: Problem using locateVariants() from the VariantAnnotation package by Marco • 0
Ok, I think I found the problem. By looking at the `locateVariants()` source code, I was able to pinpoint that the problems is when trying …
Comment: Conumee for EPIC and EPICv2 copy number by Adam • 0
As described on the [github](https://github.com/hovestadtlab/conumee2) the way to do this is using array_type = c("EPIC", "EPICv2") This i…
Comment: graper 1.22 Build is Broken by shepherl 4.1k
This is not an appropriate place to report this. this is for usage questions. maintainers are notified automatically when it is failing on …
Votes
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
Awards • All
Popular Question to Matthew McCormack ▴ 180
Popular Question to James W. MacDonald 68k
Popular Question to shepherl 4.1k
Popular Question to Marco • 0
Popular Question to Stefano Mangiola ▴ 40
Locations • All
United States, 1 hour ago
Germany, 1 hour ago
The city by the bay, 2 hours ago
Japan, 2 hours ago
United States, 4 hours ago
Traffic: 701 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6