Showing : VIPER • reset
4
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14
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4.5k
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Data input for aracne2regulon function in viper package
viper
updated 14 months ago by • 0 • written 5.6 years ago by ▴ 30
0
votes
0
replies
748
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question on the p value for VIPER results by dorothea
RNAseq VIPER Doth
2.5 years ago snowmattin • 0
0
votes
0
replies
824
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Using VIPER to compare protein activity in normal vs diseased samples
viper
3.2 years ago tjbencomo • 0
0
votes
2
replies
1.1k
views
Trying to download VIPER
software error viper
updated 5.4 years ago by ★ 13k • written 5.4 years ago by • 0
0
votes
0
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1.3k
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VIPER (Protein Activity Inference) gene expression signature format
VIPER aracne.networks
8.0 years ago user31888 ▴ 30
0
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1
reply
1.3k
views
Use of Viper with a regulatory network built with my dataset or another one?
viper aracne regulatory network aracne.networks
8.4 years ago ldetorrente ▴ 10
6 results • Page 1 of 1
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Answer: Using tximport for kallisto aligned TOIL data by James W. MacDonald 68k
If you just have the transcript data, you probably don't need (and maybe cannot use) `tximport`. Instead you could just do the naive thing …
Answer: Reading gene expression data in GPR format and converting it to xlsx format by James W. MacDonald 68k
Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead …
Comment: concentration tables suitable as input for new packages? by wilkinson • 0
I am grateful for your response. Software such as "Spectra" may parse MS-data to generate tables of concentrations, for instance. But inste…
Comment: Removing UTR from GTF for gene quantification by ATpoint ★ 4.7k
Consider asking at biostars or bioinformatics reddit, since this is not directly related to a Bioconductor problem. Anyway, a couple of th…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Hoover • 0
I got it! ([Drift Boss][1]) [1]: https://driftbossgame.co
Votes
Answer: Differential expression of proteins using somascan data
Answer: Surprising behavior for DEXseq dispersion estimate plot?
Answer: Handle zero effective gene length when tximport RSEM results
Handle zero effective gene length when tximport RSEM results
How to remove genes with 0 counts in tximport?
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