Bioconductor Update

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744

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Versions Update BindingSiteFinder

updated 2.0 years ago by Mike Smith ★ 6.6k • written 2.0 years ago by M.Klostermann • 0

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1.6k

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update Omixer maintainer

updated 4.1 years ago by shepherl 4.1k • written 4.1 years ago by l.j.sinke • 0

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1.6k

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software error packages update

updated 4.5 years ago by James W. MacDonald 67k • written 4.5 years ago by bs14ab • 0

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3.5k

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biocmanager valid update packages

updated 4.7 years ago by Kevin Blighe ★ 4.0k • written 4.7 years ago by bs14ab • 0

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846

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update new release version

5.3 years ago zzrickli • 0

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2.5k

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biocLite update all default ask

updated 5.9 years ago by Fischer-philipp ▴ 30 • written 5.9 years ago by rgiannico ▴ 10

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1.4k

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PANTHER.db update annotation go

updated 6.0 years ago by Martin Morgan 25k • written 6.0 years ago by alfonsosaera • 0

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943

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support.bioconductor.org update News

6.0 years ago shepherl 4.1k

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1.0k

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bioclite package installation update

7.9 years ago Malcolm Cook ★ 1.6k

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2.1k

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installation update

updated 8.0 years ago by James W. MacDonald 67k • written 8.0 years ago by debg • 0

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7.2k

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bioconductor biocupgrade upgrade update bioclite

8.7 years ago enricoferrero ▴ 660

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6.8k

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deseq2 update

10.0 years ago zshao1 • 0

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5.7k

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update bioclite

updated 10.2 years ago by Dan Tenenbaum ★ 8.2k • written 10.2 years ago by dianmante • 0

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1.7k

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experimentdata update

updated 10.3 years ago by Laurent Gatto 1.6k • written 10.3 years ago by paul.theodor.pyl ▴ 10

14 results • Page 1 of 1

Recent ...

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Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by Quang NN ▴ 10

Thank you so much for taking time to provide this clarification!

Comment: How can I generate a heatmap and clustering of differentially expressed genes in by Renuka • 0

Thanks Kelvin i had same doubt .Do i need to do log2 (FPKMcounts) for this

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0

Michael, Thank you very much!

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by Michael Love 43k

Yes, with the knowledge that, it is expected to be underpowered.

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0

Thank you, Michael. How? Could you provide more details? Can I just do it as usual, I mean to include batch in the model?

Votes

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

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