Showing : Unix • reset
3
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How to run the annotation tool for GARFIELD v2: garfield_annotate_uk10k.sh
garfield awk unix shell embl-ebi
updated 3.6 years ago by • 0 • written 5.7 years ago by ▴ 40
3
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3
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Issue with scp transfer of DESeq2 objects
deseq2 scp Unix Single-Cell
updated 4.9 years ago by 25k • written 4.9 years ago by ▴ 20
0
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0
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1.1k
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run KEGGprofile sofware on UNIX server
keggprofile UNIX error exit
10.0 years ago gregory voisin ▴ 430
3 results • Page 1 of 1
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Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by Robert Castelo ★ 3.4k
Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…
Answer: DESeq2 rerun returns different results by ATpoint ★ 4.5k
DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…
Answer: [How to construct a model.matrix ] by Gordon Smyth 51k
> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0
Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…
Comment: Merge Replicates vs Mixed Model by abadgerw • 0
@gabrielhoffman any insight?
Votes
A: Some questions for remove batch effect by using mnnCorrect
A: Recommendations for combining multiple 10x runs into one SingleCellExperiment
Answer: [How to construct a model.matrix ]
Answer: Handling biological replicates in DESeq2
Comment: biomaRt rnorvegicus_gene_ensembl not available anymore
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