Bioconductor TxDb.Mmusculus.UCSC.mm10.knownGene

Showing : TxDb.Mmusculus.UCSC.mm10.knownGene • reset

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TxDb.Mmusculus.UCSC.mm10.knownGene

5 weeks ago Wolfgang RAFFELSBERGER ▴ 140

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TxDb.Mmusculus.UCSC.mm10.knownGene

updated 3.7 years ago by James W. MacDonald 68k • written 3.7 years ago by msr3nf ▴ 10

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ChIPseeker TxDb.Mmusculus.UCSC.mm10.knownGene

4.2 years ago Kasit • 0

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2.1k

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TxDb.Mmusculus.UCSC.mm10.knownGene

updated 4.3 years ago by James W. MacDonald 68k • written 4.3 years ago by smgb • 0

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2.1k

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AnnotationDbi annotation TxDb.Mmusculus.UCSC.mm10.knownGene

updated 4.8 years ago by James W. MacDonald 68k • written 4.8 years ago by 94133 • 0

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chipseeker txdb.mmusculus.ucsc.mm10.knowngene

7.3 years ago doan.dinh • 0

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2.3k

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tximport kallisto txdb.mmusculus.ucsc.mm10.knowngene

updated 7.9 years ago by James W. MacDonald 68k • written 7.9 years ago by Kaustav • 0

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1.6k

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txdb txdb.mmusculus.ucsc.mm10.knowngene

updated 8.4 years ago by James W. MacDonald 68k • written 8.4 years ago by Mark ▴ 10

8 results • Page 1 of 1

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Answer: Analyzing TnSeq data with DESeq2 by cold.wolverine.arku • 0

That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…

Comment: RNA Seq using Lrt by Rob • 0

So if I have understood what you have said : If i want to see if Day (time) has an effect / is being tested - then the reduced model should…

Comment: How to convert transcript counts to gene counts in R? by ben • 0

Simply summing transcripts by gene is sufficient for use with DESeq2. [sprunki clicker][1] [1]: https://sprunkiclicker.com/

Answer: EuroBioC2024 abstract submission is open! by Ali • 0

[Promo products][1] are a smart way to boost visibility, especially with exciting updates like *News: EuroBioC2024 abstract submission is o…

Answer: ROAST for small sets by Gordon Smyth 52k

The p-values from `mroast` will be the same (up to sampling variability associated with random rotations) regardless of whether you test al…

Votes

A: Unbalanced experiment with multiple samples from each patient.

A: Understanding contrasts limma

Answer: ROAST for small sets

A: conceptual question about FDR, FDR adjusted p-value and q-value

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Popular Question to richardallenfriedmanbrooklyn ▴ 30

Scholar to Gordon Smyth 52k