Showing : TimeSeriesExperiment • reset
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Proteomics-time series with repeated measures
Proteomics limma repeatedmeasures TimeSeriesExperiment
2.3 years ago proteome_AO • 0
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time course microarray data ArrayExpress database
R GillespieColin ArrayExpress import TimeSeriesExperiment
updated 17 months ago by ▴ 40 • written 2.4 years ago by ▴ 20
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Time serious analysis Wald test in results()
DESeq2 TimeSeriesExperiment
updated 2.4 years ago by 43k • written 2.4 years ago by • 0
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Comparison between treatment timepoints in a single timeseries (control is first timepoint)
DESeq2 single-timeseries TimeSeriesExperiment
updated 2.4 years ago by 43k • written 2.5 years ago by • 0
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Time-series analyses of a multifactor design with DESeq2
DESeq2 MultipleFactors TimeSeriesExperiment
updated 2.5 years ago by 43k • written 2.5 years ago by • 0
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994
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Deseq2 contrasts and design for paired analysis
TimeSeriesExperiment RNASeq design DESeq2
updated 3.2 years ago by 43k • written 3.2 years ago by • 0
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limma: pvalues for coefficients topTable
TimeSeriesExperiment Regression top limma
updated 3.5 years ago by 68k • written 3.5 years ago by • 0
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DESeq2 time course and dosage response
LRT Design DESeq2 doseResponse TimeSeriesExperiment
updated 3.5 years ago by 43k • written 3.5 years ago by • 0
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Time series analysis - DESeq2
TimeSeriesExperiment
updated 3.8 years ago by 43k • written 3.8 years ago by ▴ 10
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Job: Biostatistics Research Associate, York, UK
QTL fourier TimeSeriesExperiment timecoursedata
3.9 years ago Daphne • 0
10 results • Page 1 of 1
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Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k
No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…
Answer: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k
I strongly recommend to not concern yourself with these sorts of marginal problems because you're entering a realm in which you're entirely…
Comment: Problem using locateVariants() from the VariantAnnotation package by Marco • 0
Ok, I think I found the problem. By looking at the `locateVariants()` source code, I was able to pinpoint that the problems is when trying …
Comment: Conumee for EPIC and EPICv2 copy number by Adam • 0
As described on the [github](https://github.com/hovestadtlab/conumee2) the way to do this is using array_type = c("EPIC", "EPICv2") This i…
Comment: graper 1.22 Build is Broken by shepherl 4.1k
This is not an appropriate place to report this. this is for usage questions. maintainers are notified automatically when it is failing on …
Votes
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
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