Bioconductor Time-course

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688

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microarray normalization tscR time-course

updated 4.3 years ago by Kevin Blighe ★ 4.0k • written 4.3 years ago by keremwai • 0

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963

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deseq2 time-serie time-course fold-change

updated 4.6 years ago by swbarnes2 ★ 1.4k • written 4.6 years ago by Victor Chano • 0

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741

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deseq2 design time-course

updated 5.4 years ago by Michael Love 42k • written 5.4 years ago by Victor Chano • 0

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1.7k

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deseq2 Time-course

updated 5.6 years ago by Michael Love 42k • written 5.6 years ago by h.valipour.k • 0

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2.5k

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deseq2 time-course

updated 6.4 years ago by Michael Love 42k • written 6.4 years ago by rbenel ▴ 40

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1.1k

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masigpro covariates limma differential expression time-course

7.1 years ago veersingh.marwah • 0

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2.7k

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limma multiple time points time-course differential expression

updated 7.2 years ago by Aaron Lun ★ 28k • written 7.2 years ago by Jake • 0

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2.2k

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rnaseq deseq2 time-course

updated 7.3 years ago by Gavin Kelly ▴ 690 • written 7.3 years ago by inzirio ▴ 10

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Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0

thank you for your advice, I posted separate post.

Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by Robert Castelo ★ 3.4k

Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…

Answer: DESeq2 rerun returns different results by ATpoint ★ 4.5k

DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…

Answer: [How to construct a model.matrix ] by Gordon Smyth 51k

> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…

Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0

Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…

Votes

C: DESeq2 baseMean values for each sample

Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta

A: Some questions for remove batch effect by using mnnCorrect

A: Recommendations for combining multiple 10x runs into one SingleCellExperiment

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