Bioconductor Time-course

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725

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microarray normalization tscR time-course

updated 4.6 years ago by Kevin Blighe ★ 4.0k • written 4.6 years ago by keremwai • 0

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1.1k

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deseq2 time-serie time-course fold-change

updated 4.9 years ago by swbarnes2 ★ 1.4k • written 4.9 years ago by Victor Chano • 0

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788

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deseq2 design time-course

updated 5.7 years ago by Michael Love 43k • written 5.7 years ago by Victor Chano • 0

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1.8k

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deseq2 Time-course

updated 5.9 years ago by Michael Love 43k • written 5.9 years ago by h.valipour.k • 0

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2.7k

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deseq2 time-course

updated 6.7 years ago by Michael Love 43k • written 6.7 years ago by rbenel ▴ 40

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1.1k

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masigpro covariates limma differential expression time-course

7.4 years ago veersingh.marwah • 0

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2.9k

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limma multiple time points time-course differential expression

updated 7.5 years ago by Aaron Lun ★ 28k • written 7.5 years ago by Jake • 0

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2.4k

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rnaseq deseq2 time-course

updated 7.6 years ago by Gavin Kelly ▴ 690 • written 7.6 years ago by inzirio ▴ 10

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Comment: Problem using locateVariants() from the VariantAnnotation package by Marco • 0

Ok, I think I found the problem. By looking at the `locateVariants()` source code, I was able to pinpoint that the problems is when trying …

Comment: Conumee for EPIC and EPICv2 copy number by Adam • 0

As described on the [github](https://github.com/hovestadtlab/conumee2) the way to do this is using array_type = c("EPIC", "EPICv2") This i…

Comment: graper 1.22 Build is Broken by shepherl 4.1k

This is not an appropriate place to report this. this is for usage questions. maintainers are notified automatically when it is failing on …

Comment: graper 1.22 Build is Broken by shepherl 4.1k

This post does not fit the theme of this forum.

Comment: Unbalanced experiment with multiple samples from each patient. by canarias • 0

Hi Aaron, I'm faced with an analysis that has basically the same problem as OP had, but is probably even more unbalanced: In most cases, I…

Votes

A: Unbalanced experiment with multiple samples from each patient.

Unbalanced experiment with multiple samples from each patient.

Answer: Vertical line at A=0, nothing else, on MA plot

Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct

Answer: Group-specific condition effects with individuals nested: matrix is not full ra

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