Showing : Time course • reset
3
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Is it capable to analysis the unbalanced time course experiment by DESeq2?
time course deseq2
updated 4.1 years ago by 43k • written 4.1 years ago by • 0
3
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2
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2.4k
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DESeq2 time course model
deseq2 time series time course
updated 4.2 years ago by 43k • written 4.2 years ago by ▴ 10
0
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2
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1.3k
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Design of time-course experiment in DESeq2
deseq2 design design formula time course lrt
updated 4.9 years ago by 43k • written 4.9 years ago by • 0
0
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3
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1.0k
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Analysis strategy - possible to use naive control group as t=0 for two treatment groups?
Deseq2 design time course basal group
updated 5.4 years ago by 43k • written 5.4 years ago by • 0
0
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15
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3.1k
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DESeq2 Time Series and "control" condition
deseq2 time course
6.1 years ago sum732 • 0
0
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1
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4.4k
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DESeq2 - How to study time course experiment taking subject variability into account?
deseq2 repeated measures time course
updated 6.9 years ago by 43k • written 6.9 years ago by • 0
0
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0
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Could an experienced user of Polyester help me with some questions?
rna-seq polyester simulation time course
6.9 years ago fa.gholizadeh89 • 0
7
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2
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3.6k
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Incorporating RUVSeq factors of unwanted variation in DESeq2 time course analysis
deseq2 ruvseq spike-in time course time series
updated 7.0 years ago by ▴ 980 • written 7.0 years ago by ▴ 20
0
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9
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2.0k
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limma- time course multiple treatments
limma time course
7.1 years ago • updated 7.0 years ago harelarik ▴ 60
1
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3
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1.2k
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Matrix is not full rank with Multifactorial Experiment and Time course
deseq2 multiple factor design model.matrix time course
updated 7.1 years ago by 43k • written 7.1 years ago by • 0
5
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27
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4.2k
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DESeq2 model - How to test case/control time course model when taking account within sample variability?
deseq2 multiple time points time course casecontrol model design
updated 3.9 years ago by 43k • written 7.4 years ago by ▴ 10
2
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5
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3.5k
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deseq2 multifactor timeseries help
deseq2 multifactorial design time course
updated 7.6 years ago by • 0 • written 7.6 years ago by ▴ 10
0
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3
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1.5k
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About experimental design of RNA-seq
time course block batch effect WGCNA
updated 7.7 years ago by 43k • written 7.7 years ago by • 0
0
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1
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1.7k
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intra-sample time series comparison using DESeq2
deseq2 time course rnaseq design contrast
updated 7.7 years ago by 43k • written 7.7 years ago by • 0
2
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1
reply
2.1k
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edgeR: time series analysis
edger time course
updated 7.8 years ago by 51k • written 7.8 years ago by ▴ 80
2
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3
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3.4k
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Analysis of RNA-seq time series with edgeR
edger rna-seq differential expression timecourse time course
updated 8.1 years ago by ★ 28k • written 8.1 years ago by • 0
0
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3
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1.7k
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DESeq2 blocking by condition over time
deseq2 phyloseq time course
8.2 years ago akp • 0
0
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3
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2.2k
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DESeq2 time course experiments for multigroups comparison (>2 groups)
DESeq2 Time course RNA-seq
updated 8.4 years ago by 43k • written 8.4 years ago by ▴ 40
0
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5
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2.0k
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What color is assigned in heatmap for time series analysis
deseq2 time course heatmap
updated 8.4 years ago by ▴ 10 • written 8.4 years ago by ▴ 10
0
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5
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3.5k
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coefficients meaning in time course analysis with DESeq2
deseq2 timecourse time course design and contrast matrix coefficient of variation
updated 9.1 years ago by 43k • written 9.1 years ago by ★ 1.5k
3
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4
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2.9k
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Bioconductor vignette on Time course experiments only describes how to plot the the gene with the smallest p-value. How can I plot specific genes of …
timecourse time course rna-seq deseq2 ggplot2
9.2 years ago moldach ▴ 20
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0
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Limma table results (time course analysis)
limma time course
10.6 years ago • updated 10.0 years ago Gordon Smyth 51k
0
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1
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1.8k
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Limma table results (time course analysis)
limma time course
updated 10.0 years ago by 51k • written 10.6 years ago by ★ 13k
23 results • Page 1 of 1
Recent ...
Replies
Answer: Deseq2 res Function by Michael Love 43k
> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
Answer: ANOVA like approach of edgeR by Gordon Smyth 51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data by Gordon Smyth 51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix? by NB • 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
Votes
Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
Comment: ANOVA like approach of edgeR
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