Showing : TileDBArray • reset
0
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8
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1.7k
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Support of parquet files for on-disk Bioconductor objects
DelayedArray TileDBArray
15 months ago sandmann.t ▴ 70
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1
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1.1k
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How to incrementaly load the nzdata and nzindex from SparseArraySeed
TileDBArray HDF5Array DelayedArray
3.6 years ago • updated 3.5 years ago Koki ▴ 10
2
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6
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1.8k
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"dim<-" against on-disk arrays
DelayedArray TileDBArray HDF5Array
updated 3.6 years ago by 16k • written 3.7 years ago by ▴ 10
6
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6
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2.1k
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Is it possible to create `HDF5Array` Delayed Arrays from HDF5 files hosted on S3?
TileDBArray HDF5Array MultiAssayExperiment
3.8 years ago Thomas Sandmann ▴ 90
4 results • Page 1 of 1
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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
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