Bioconductor TFBSTools

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742

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TFBSTools R forloop

updated 2.6 years ago by onlineclasshelpnow • 0 • written 2.6 years ago by HELEN • 0

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668

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TFBSTools FASTA RStudio

2.7 years ago HELEN • 0

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813

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TFBSTools DNASeqData readFASTA DNA RStudio

updated 2.7 years ago by James W. MacDonald 66k • written 2.7 years ago by HELEN • 0

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894

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error TFBSTools R

2.7 years ago HELEN • 0

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650

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TFBSTools RStudio R

2.7 years ago HELEN • 0

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2.3k

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pwm tfbstools jaspar

updated 6.8 years ago by Ge Tan ▴ 20 • written 6.8 years ago by chrisclarkson100 ▴ 50

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1.9k

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TFBSTools looping PFMatrixList PFMatrix bioconductor

7.2 years ago nathan.lawlor03 • 0

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1.1k

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bioconductor tfbstools

updated 7.7 years ago by Ge Tan ▴ 20 • written 7.7 years ago by laurabuggiotti • 0

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1.4k

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tfbstools jaspar

updated 8.7 years ago by Ge Tan ▴ 20 • written 8.7 years ago by JasonLouisStein • 0

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1.4k

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tfbstools

updated 9.1 years ago by Ge Tan ▴ 20 • written 9.3 years ago by franceskrussell • 0

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Comment: Trouble Installing DADA2 (warning: R new user) by shepherl 3.9k

As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…

Answer: LRT test for different timepoints (one tissue types vs. many tissue types) by Michael Love 42k

No, this is a contrast of estimated coefficient (e.g. the Wald test).

Comment: Ranking the GSEA Results by Michael Love 42k

Got it. So then I'll take off DESeq2 as its mostly a downstream question. You may need to direct the fgsea developer to the thread. When yo…

Comment: Ranking the GSEA Results by V_Vibes • 0

I have actually used the "fgsea" Bioconductor package which is used for GSEA. Thanks for pointing that out. I have edited that in the origi…

Comment: Ranking the GSEA Results by V_Vibes • 0

The idea was inspired by people ranking the DEGs for preranked GSEA using their log2FC * (-log10 p-value). Also, the GSEA results I am gett…

Votes

Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)

ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features

Comment: How to get the DMR?

Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it

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