Bioconductor TCGAutils

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602

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TCGAutils

updated 10 weeks ago by James W. MacDonald 68k • written 10 weeks ago by xiaofeiwang18266 ▴ 60

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951

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normalization RNASEQ Normalization TCGAutils TCGA

updated 2.3 years ago by ATpoint ★ 4.8k • written 2.3 years ago by Deniz • 0

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2.3k

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MultiAssayExperiment curatedTCGAData TCGAutils

4.3 years ago svlachavas ▴ 840

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1.5k

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MultiAssayExperiment curatedTCGAData TCGAutils

updated 4.3 years ago by Marcel Ramos 700 • written 4.3 years ago by svlachavas ▴ 840

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1.7k

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MultiAssayExperiment curatedTCGAData TCGAutils

updated 4.3 years ago by Marcel Ramos 700 • written 4.5 years ago by svlachavas ▴ 840

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4.9k

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TCGAutils TCGAbiolinks GenomicDataCommons

updated 5.7 years ago by Marcel Ramos 700 • written 5.7 years ago by Dario Strbenac ★ 1.6k

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943

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TCGAutils

updated 6.0 years ago by Levi Waldron ★ 1.1k • written 6.0 years ago by vittorio.fortino • 0

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1.7k

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TCGAutils multiassayexperiment coad

updated 6.8 years ago by Marcel Ramos 700 • written 6.8 years ago by mario.zanfardino ▴ 160

8 results • Page 1 of 1

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Comment: Co-occurrence Network Analysis between Algae and Bacteria by solarsunyy • 0

Deploy powerful missiles that generate large-scale explosions, resulting in the [solar smash online][1] formation of substantial craters on…

Comment: Phyloseq: How to add sample table to phyloseq object by chillykean • 0

@[Chill Guy Clicker][1]: You can add sample_table by creating a data frame containing sample information and using sample_data(myobject) <-…

Comment: Issue with Soft-Thresholding in WGCNA by dirty.cougar.risi • 0

Interesting data! Looking at these genes, it's like navigating a complex maze. The fluctuating values remind me of chasing high scores in […

Answer: compute_fasta_digest does not match Salmon index hash by Michael Love 43k

Can you provide more details on when this is happening? The salmon index is the definitive hash associated with the quant files, so I'm con…

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species by James W. MacDonald 68k

Oh wait. You want to map from Ensembl to NCBI? That's hard to do with model organisms, let alone non-model. This `OrgDb` doesn't have Ensem…

Votes

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

what the test method for enrichGO in clusterProfiler?

A: single-cells RNA-seq analysis by MAST with unbalanced group size

Comment: plyranges: find exact GRanges match keeping metadata columns

Awards • All

Scholar to Michael Love 43k