Bioconductor TCGAutils

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627

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TCGAutils

updated 3 months ago by James W. MacDonald 68k • written 3 months ago by xiaofeiwang18266 ▴ 60

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979

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normalization RNASEQ Normalization TCGAutils TCGA

updated 2.4 years ago by ATpoint ★ 4.8k • written 2.4 years ago by Deniz • 0

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2.3k

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MultiAssayExperiment curatedTCGAData TCGAutils

4.4 years ago svlachavas ▴ 840

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1.5k

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MultiAssayExperiment curatedTCGAData TCGAutils

updated 4.4 years ago by Marcel Ramos 700 • written 4.4 years ago by svlachavas ▴ 840

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1.7k

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MultiAssayExperiment curatedTCGAData TCGAutils

updated 4.4 years ago by Marcel Ramos 700 • written 4.5 years ago by svlachavas ▴ 840

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5.0k

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TCGAutils TCGAbiolinks GenomicDataCommons

updated 5.8 years ago by Marcel Ramos 700 • written 5.8 years ago by Dario Strbenac ★ 1.6k

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948

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TCGAutils

updated 6.1 years ago by Levi Waldron ★ 1.1k • written 6.1 years ago by vittorio.fortino • 0

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1.7k

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TCGAutils multiassayexperiment coad

updated 6.8 years ago by Marcel Ramos 700 • written 6.8 years ago by mario.zanfardino ▴ 160

8 results • Page 1 of 1

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Answer: Analyzing TnSeq data with DESeq2 by cold.wolverine.arku • 0

That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…

Comment: RNA Seq using Lrt by Rob • 0

So if I have understood what you have said : If i want to see if Day (time) has an effect / is being tested - then the reduced model should…

Comment: How to convert transcript counts to gene counts in R? by ben • 0

Simply summing transcripts by gene is sufficient for use with DESeq2. [sprunki clicker][1] [1]: https://sprunkiclicker.com/

Answer: EuroBioC2024 abstract submission is open! by Ali • 0

[Promo products][1] are a smart way to boost visibility, especially with exciting updates like *News: EuroBioC2024 abstract submission is o…

Answer: ROAST for small sets by Gordon Smyth 52k

The p-values from `mroast` will be the same (up to sampling variability associated with random rotations) regardless of whether you test al…

Votes

A: Unbalanced experiment with multiple samples from each patient.

A: Understanding contrasts limma

Answer: ROAST for small sets

A: conceptual question about FDR, FDR adjusted p-value and q-value

Awards • All

Popular Question to richardallenfriedmanbrooklyn ▴ 30

Scholar to Gordon Smyth 52k