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StageR
•
reset
0
votes
2
replies
437
views
Swimming downstream: transcript fold changes
DEXSeq
stageR
7 months ago
jbono
▴ 10
0
votes
1
reply
612
views
stageR p-adj values of zero
stageR
updated 2.7 years ago by
Koen Van den Berge
▴ 180 • written 2.7 years ago by
giwa.ao
• 0
0
votes
1
reply
862
views
stageR with input from DRIMSeq
DRIMSeq
stageR
updated 5.3 years ago by
Koen Van den Berge
▴ 180 • written 5.3 years ago by
sdvie
• 0
2
votes
4
replies
1.7k
views
stageR: Error in stageWiseAdjustment
stageR
rnaseqDTU
DRIMSeq
DEXSeq
5.4 years ago
d-joester
▴ 20
4
votes
4
replies
1.3k
views
Correct use of Nested/Stage-wise testing with limma/stageR for 3-group design.
limma
stageR
decideTests
updated 5.5 years ago by
Koen Van den Berge
▴ 180 • written 5.5 years ago by
maltethodberg
▴ 180
0
votes
3
replies
1.1k
views
Post-hoc filtering on the standard deviation in proportions
drimseq
rnaseqdtu
stager
updated 5.6 years ago by
Michael Love
42k • written 5.6 years ago by
Jack.Hearn
• 0
1
vote
5
replies
1.6k
views
Plotting Expression of Differential Transcripts plotDEXseq
DEXSeq
StageR
rnaseqDTU
updated 5.7 years ago by
Michael Love
42k • written 5.7 years ago by
rbenel
▴ 40
2
votes
9
replies
1.8k
views
stageR NA in getAdjustedPValues() (method=dtu)
drimseq
stageR
dtu
salmon rna seq
updated 6.0 years ago by
Koen Van den Berge
▴ 180 • written 6.0 years ago by
fiona.dick91
▴ 60
8 results • Page
1 of 1
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Comment: Ranking the GSEA Results
by
Lluís Revilla Sancho
▴ 730
You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…
Answer: Create a Graph w/ Only the Genes Interaction
by
Antonio
• 0
Thank you all, I solved my issue by creating a for loop. Cheers!
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…
Comment: Trouble Installing DADA2 (warning: R new user)
by
shepherl
3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Votes
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
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