Showing : SpatialExperiment • reset
3
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SingleCellExperiment convenience function for metadata+expression?
SpatialExperiment SingleCellExperiment SpatialFeatureExperiment
updated 7 hours ago by ▴ 40 • written 5 weeks ago by • 0
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142
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cbind for multiple SpatialExperiment takes so much time
SpatialExperiment SingleCellExperiment
4 months ago Ibrahim • 0
0
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1
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467
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Basic import of seqFISH from Spatial Genomics genePS into SpatialExperiment
seqFISH SpatialExperiment
7 months ago • updated 6 months ago Matthew Thornton ▴ 380
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0
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597
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Job: Postdoc+PhD position: Spatial & Single-Cell Computational Immunogenomics for Cancer Diagnosis
JobPosting CuratedAtlasQueryR MoleculeExperiment SingleCellExperiment SpatialExperiment
8 months ago Stefano Mangiola ▴ 40
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393
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News: Interested in the analysis of Spatial Omics data?
tidySpatialExperiment SpatialExperiment MoleculeExperiment
10 months ago info ▴ 10
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662
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Job: Bioinformatics Spatial Omics and Proteomics Postdoc (Research Officer / Senior Research Officer) at WEHI (Melbourne, Australia)
Proteomics JobPosting SingleCell Spatial SpatialExperiment
11 months ago Peter Hickey ▴ 750
0
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984
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Job: Bioinformatics Spatial Omics Postdoc (Research Officer / Senior Research Officer) at WEHI (Melbourne, Australia)
SpatialExperiment JobPosting
20 months ago Peter Hickey ▴ 750
1
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Convert SpatialExperiment Object to Seurat Object
scuttle scater seurat SpatialExperiment
2.1 years ago cathalgking ▴ 10
0
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1
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1.0k
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cell_count column in SpatialExperiment Object
scuttle scater SpatialExperiment
updated 2.1 years ago by ▴ 160 • written 2.1 years ago by ▴ 10
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Answer: pairedGSEA input files by James W. MacDonald 68k
If you want to do a splicing analysis, you cannot have counts/gene because the counts are aggregated at the gene level, not the transcript …
Answer: Group-specific condition effects with individuals nested: matrix is not full ra by James W. MacDonald 68k
Yes to both questions.
Answer: TheProcess got Killed by James W. MacDonald 68k
'The process got killed' doesn't provide much information. That could be due to more than one thing. But the simplest explanation is that y…
Answer: Vertical line at A=0, nothing else, on MA plot by melissa • 0
Thank you so much @mikelove ! I was searching for a solution for hours. You made a PhD student very happy. Greetings
Comment: Group-specific condition effects with individuals nested: matrix is not full ra by picasa1983 • 0
Sorry I made a typo in my table (now edited). The donor 4 actually has the 2 conditions: KO and WT. I think I found the issue: my design m…
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C: Vertical line at A=0, nothing else, on MA plot
Answer: SingleCellExperiment convenience function for metadata+expression?
Answer: SingleCellExperiment convenience function for metadata+expression?
Answer: help documentation for keytypes in annotationdbi packages
Interpreting DESEQ2 interaction term and inclusion of covariate
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