Showing : SpatialExperiment • reset
3
votes
2
replies
484
views
SingleCellExperiment convenience function for metadata+expression?
SpatialExperiment SingleCellExperiment SpatialFeatureExperiment
updated 8 weeks ago by ▴ 40 • written 3 months ago by • 0
0
votes
0
replies
182
views
cbind for multiple SpatialExperiment takes so much time
SpatialExperiment SingleCellExperiment
6 months ago Ibrahim • 0
0
votes
1
reply
511
views
Basic import of seqFISH from Spatial Genomics genePS into SpatialExperiment
seqFISH SpatialExperiment
8 months ago Matthew Thornton ▴ 380
0
votes
0
replies
688
views
Job: Postdoc+PhD position: Spatial & Single-Cell Computational Immunogenomics for Cancer Diagnosis
JobPosting CuratedAtlasQueryR MoleculeExperiment SingleCellExperiment SpatialExperiment
10 months ago Stefano Mangiola ▴ 40
0
votes
0
replies
429
views
News: Interested in the analysis of Spatial Omics data?
tidySpatialExperiment SpatialExperiment MoleculeExperiment
12 months ago info ▴ 10
0
votes
0
replies
718
views
Job: Bioinformatics Spatial Omics and Proteomics Postdoc (Research Officer / Senior Research Officer) at WEHI (Melbourne, Australia)
Proteomics JobPosting SingleCell Spatial SpatialExperiment
13 months ago Peter Hickey ▴ 750
0
votes
0
replies
1.0k
views
Job: Bioinformatics Spatial Omics Postdoc (Research Officer / Senior Research Officer) at WEHI (Melbourne, Australia)
SpatialExperiment JobPosting
22 months ago Peter Hickey ▴ 750
1
vote
0
replies
2.4k
views
Convert SpatialExperiment Object to Seurat Object
scuttle scater seurat SpatialExperiment
2.2 years ago cathalgking ▴ 10
0
votes
1
reply
1.1k
views
cell_count column in SpatialExperiment Object
scuttle scater SpatialExperiment
updated 2.2 years ago by ▴ 160 • written 2.3 years ago by ▴ 10
9 results • Page 1 of 1
Recent ...
Replies
Answer: Help using reduceSimMatrix with a custom annotation by sergisayolspuig ▴ 80
Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…
Answer: Analyzing TnSeq data with DESeq2 by cold.wolverine.arku • 0
That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…
Comment: RNA Seq using Lrt by Rob • 0
So if I have understood what you have said : If i want to see if Day (time) has an effect / is being tested - then the reduced model should…
Comment: How to convert transcript counts to gene counts in R? by ben • 0
Simply summing transcripts by gene is sufficient for use with DESeq2. [sprunki clicker][1] [1]: https://sprunkiclicker.com/
Answer: EuroBioC2024 abstract submission is open! by Ali • 0
[Promo products][1] are a smart way to boost visibility, especially with exciting updates like *News: EuroBioC2024 abstract submission is o…
Votes
A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
Answer: ROAST for small sets
Answer: ROAST for small sets
A: conceptual question about FDR, FDR adjusted p-value and q-value
Awards • All
Popular Question to sergisayolspuig ▴ 80
Popular Question to richardallenfriedmanbrooklyn ▴ 30
Scholar to Gordon Smyth 52k
Popular Question to shepherl 4.1k
Popular Question to Szabolcs • 0
Locations • All
France, just now
Sweden, 2 minutes ago
United States, 7 minutes ago
Malaysia, 14 minutes ago
Japan, 37 minutes ago
Traffic: 1094 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6